Job Description P09551 Confidence 99.97% Date Thu Jan 5 11:02:25 GMT 2012 Rank 29 Aligned Residues 222 % Identity 18% Template d1pb7a_ SCOP info Periplasmic binding protein-like II Periplasmic binding protein-like II Phosphate binding protein-like Resolution 1.35

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.								.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.																		.	.	.	.	.	.
Predicted Secondary structure																											.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																											.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		L	P	E	T	V	R	I	G	T	D	T	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	.	.	.	.	.	.	.	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	F	D	A	L	I	P
Query Conservation																											.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																											.	.	.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	D	G	T	C	K	E	E	F	T	V	N	G	D	P	V	K	K	V	I	C	T	G	P	N	H	T	V	P	Q	C	C	Y	G	F	C	I	D	L	L	I	K	L	A	R	T	M	N	F	T	Y	E	V	H	L	V	A	D	G	K	F	G	T	Q	E	R	V	N	N	S	N	K	K	E	W	N	G	M	M	G
Template Known Secondary structure		T	T	S	S					B		T	T	S		B																			S														T									T	T										T	T	S	S
Template Predicted Secondary structure
Template SS confidence
		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.						.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																																																									.	.	.	.	.
Query SS confidence																																																									.	.	.	.	.
Query Sequence		S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	.	.	.	.	.	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S
Query Conservation																																																									.	.	.	.	.
Alig confidence																																																									.	.	.	.	.
Template Conservation
Template Sequence		E	L	L	S	G	Q	A	D	M	I	V	A	P	L	T	I	N	N	E	R	A	Q	Y	I	E	F	S	K	P	F	K	Y	Q	G	L	T	I	L	V	K	K	G	T	R	I	T	G	I	N	D	P	R	L	R	N	P	S	D	K	F	I	Y	A	T	V	K	Q	S	S	V	D	I	Y	F	R	R	Q	V	E	L
Template Known Secondary structure						T	S		S				S	S		B							T	T					S		S											T	T					S	T	T						S		B	T	T	B					B	T	T	S								T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		112	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.
		155	.	.					.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure					.	.	.	.
Query SS confidence					.	.	.	.
Query Sequence		K	G	V	.	.	.	.	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	D	A	E	L	T	A
Query Conservation					.	.	.	.
Alig confidence					.	.	.	.																																								.	.	.	.	.	.	.	.																							.
Template Conservation																																																.	.	.	.	.	.	.	.																							.
Template Sequence		S	T	M	Y	R	H	M	E	K	H	N	Y	E	S	A	A	E	A	I	Q	A	V	R	D	N	K	L	H	A	F	I	W	D	S	A	V	L	E	F	E	A	S	Q	K	C	D	.	.	.	.	.	.	.	.	L	V	T	T	G	E	L	F	F	R	S	G	F	G	I	G	M	R	K	D	S	P	.	W	K	Q
Template Known Secondary structure									T	T	T		B	S	S										T	T	S		S																	T	T	.	.	.	.	.	.	.	.					S	S		S											T	T		S	.	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.																							.
Template SS confidence
		192	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.									.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.		260	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D	K	M	A	K	K	Y	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	S	L	S	I	L	K	S	H	E	N	G	F	M	E	D	L	D	K	T	W	V	R
Template Known Secondary structure													S	S										T	S
Template Predicted Secondary structure
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions