Job Description P09551 Confidence 98.82% Date Thu Jan 5 11:02:25 GMT 2012 Rank 37 Aligned Residues 218 % Identity 11% Template c3n5lA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:binding protein component of abc phosphonate transporter; PDBTitle: crystal structure of a binding protein component of abc phosphonate2 transporter (pa3383) from pseudomonas aeruginosa at 1.97 a resolution Resolution 1.97 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.		.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																				.
Query SS confidence																																																				.
Query Sequence		L	P	E	T	V	R	I	G	T	D	T	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	.	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E
Query Conservation																																																				.
Alig confidence																	.	.	.	.	.	.	.																													.
Template Conservation																	.	.	.	.	.	.	.
Template Sequence		D	Q	P	V	I	N	F	G	I	I	S	T	E	S	S	.	.	.	.	.	.	.	Q	N	L	K	S	I	W	E	P	F	L	K	D	X	S	Q	Q	T	G	Y	Q	V	K	A	F	F	A	P	D	Y	A	G	I	I	Q	G	X	R	F	D	K	V	D	I	A	W	Y	G	N	K	A	A	X	E	A	V	D	R
Template Known Secondary structure													S	S			.	.	.	.	.	.	.																			S	S								S	S										T	T	S		S
Template Predicted Secondary structure																	.	.	.	.	.	.	.
Template SS confidence
		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40								.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.
		103	.	.	.	.	.	.	110	.	.	.	.								.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130					.	.	.	.	.	.	.	.	.	140	.	.	.	.	.				.	.	.	.	150	.	.	.	.	.	.							.	.	.	160	.	.
Predicted Secondary structure														.	.	.	.	.	.	.																	.	.	.	.																.	.	.												.	.	.	.	.	.
Query SS confidence														.	.	.	.	.	.	.																	.	.	.	.																.	.	.												.	.	.	.	.	.
Query Sequence		I	A	F	S	D	K	L	Y	A	A	D	S	.	.	.	.	.	.	.	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	.	.	.	.	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	.	.	.	A	Y	A	N	E	T	W	R	S	K	G	.	.	.	.	.	.	V	D	V	V	A	Y
Query Conservation														.	.	.	.	.	.	.																	.	.	.	.																.	.	.												.	.	.	.	.	.
Alig confidence														.	.	.	.	.	.	.																	.	.	.	.																.	.	.												.	.	.	.	.	.
Template Conservation
Template Sequence		A	H	G	E	I	F	A	Q	T	V	A	A	S	G	A	P	G	Y	W	S	L	L	I	A	N	K	D	S	K	I	D	S	L	E	D	X	L	A	N	A	K	S	L	T	F	G	N	G	D	P	N	S	T	S	G	Y	L	V	P	G	Y	Y	V	F	A	K	N	N	V	D	P	V	K	A	F	K	R	T	L	N
Template Known Secondary structure		S											T	T			S										T	T		S			S							T	G	G	G								T	T		T	T	T	T							T	T	T	T	T	T							S	S
Template Predicted Secondary structure
Template SS confidence
		99	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q
Query Conservation																																																																.
Alig confidence																																																			.	.	.	.										.
Template Conservation																																																			.	.	.	.
Template Sequence		S	S	H	E	V	N	A	L	A	V	A	N	K	Q	V	D	V	A	T	F	N	T	E	G	X	E	R	L	E	L	T	Q	P	E	K	A	R	Q	L	K	V	I	W	K	S	P	L	I	P	.	.	.	.	G	D	P	L	V	W	R	N	N	L	S	D	E	Q	K	N	K	L	R	D	F	F	F	K	Y	G	A
Template Known Secondary structure													T	T	S	S	S																					T	T												.	.	.	.								T	T	S
Template Predicted Secondary structure																																																			.	.	.	.
Template SS confidence
		179	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.
		242	.	.	.	.	.	.	.	250	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	G	T	Y	D	K	M	A	K	K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	A	E	Q	K	K	V	L	A	D	L
Template Known Secondary structure		S										T
Template Predicted Secondary structure
Template SS confidence
		255	.	.	.	.	260	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions