Job Description P09551 Confidence 81.17% Date Thu Jan 5 11:02:25 GMT 2012 Rank 78 Aligned Residues 196 % Identity 13% Template c3jv9B_ PDB info PDB header:transcription Chain: B: PDB Molecule:transcriptional regulator, lysr family; PDBTitle: the structure of a reduced form of oxyr from n. meningitidis Resolution 2.39 Å

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		25	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.
Predicted Secondary structure																																									.
Query SS confidence																																									.
Query Sequence		P	E	T	V	R	I	G	T	D	T	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	.	Q	V	K	C	T	W	V	A	S	D	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E	I
Query Conservation																																									.
Alig confidence																.	.	.	.	.	.	.	.	.	.	.															.
Template Conservation																.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	G	A	F	K	L	G	L	I	F	T	V	A	P	.	.	.	.	.	.	.	.	.	.	.	Y	L	L	P	K	L	I	V	S	L	R	R	T	A	P	K	X	P	L	X	L	E	E	N	Y	T	H	T	L	T	E	S	L	K	R	G	D	V	D	A	I	I	V	A	E	P	F	Q	E	P	G	I	V	T	E
Template Known Secondary structure											T	T	T			.	.	.	.	.	.	.	.	.	.	.															T	T																			T	T	S	S	S						S	S				T	T
Template Predicted Secondary structure																.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		90	.	.	.	.	.	.	.	.	.	100	.	.	.												.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.
		104	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	F	S	D	K	L	Y	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D
Query Conservation
Alig confidence																																																							.	.	.
Template Conservation																																																							.	.	.
Template Sequence		P	L	Y	D	E	P	F	F	V	I	V	P	K	G	H	S	F	E	E	L	D	A	V	S	P	R	X	L	G	E	E	Q	V	L	L	L	T	E	G	N	C	X	R	D	Q	V	L	S	S	C	T	N	T	.	.	.	L	Q	G	S	S	I	N	T	I	R	H	X	V	A	S	G	L	A	I	S	V	L	P	A
Template Known Secondary structure														T	T		G	G	G	G		S	S			S	S	G	G	G	G	S							T	T									T	T					.	.	.				S	S										T	T	S							G
Template Predicted Secondary structure																																																							.	.	.
Template SS confidence
		159	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.				.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
		184	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.			.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.
Predicted Secondary structure																																											.	.
Query SS confidence																																											.	.
Query Sequence		E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	.	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G
Query Conservation																																											.	.
Alig confidence			.	.	.	.	.	.																.	.	.																	.	.
Template Conservation			.	.	.	.	.	.																.	.	.
Template Sequence		T	.	.	.	.	.	.	A	L	T	E	N	D	H	X	L	F	S	I	I	P	F	.	.	.	E	G	T	P	P	S	R	R	V	V	L	A	Y	R	R	N	F	V	R	P	K	A	L	S	A	X	K	A	A	I	X	Q	S	Q	L	H	G
Template Known Secondary structure		G	.	.	.	.	.	.	G			G	G	G	G	G	T							.	.	.	S	S	S												T	T																T	S			T	T
Template Predicted Secondary structure			.	.	.	.	.	.																.	.	.
Template SS confidence
		248							.	250	.	.	.	.	.	.	.	.	.	260	.	.	.				.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions