Job Description P09551 Confidence 98.11% Date Thu Jan 5 11:02:25 GMT 2012 Rank 41 Aligned Residues 221 % Identity 14% Template c3ix1A_ PDB info PDB header:biosynthetic protein Chain: A: PDB Molecule:n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding PDBTitle: periplasmic n-formyl-4-amino-5-aminomethyl-2-methylpyrimidine binding2 protein from bacillus halodurans Resolution 2.40 Å

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		24	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		L	P	E	T	V	R	I	G	T	D	T	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	.	D	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E
Query Conservation																																																			.
Alig confidence												.	.				.	.	.	.	.	.																													.
Template Conservation												.	.				.	.	.	.	.	.
Template Sequence		A	L	E	T	V	E	V	M	L	D	.	.	W	Y	P	.	.	.	.	.	.	N	A	V	H	T	F	L	Y	V	A	I	E	N	G	Y	F	A	E	E	G	L	D	V	D	I	V	F	P	T	N	P	T	D	P	I	Q	L	T	A	S	G	A	I	P	L	A	L	S	Y	Q	P	D	V	I	L	A	R	S	K
Template Known Secondary structure											S	.	.	S	S		.	.	.	.	.	.		G	G	G									T	T					T	T									S	S	T	T									T	S		S															T
Template Predicted Secondary structure												.	.				.	.	.	.	.	.
Template SS confidence
		29	30	.	.	.	.	.	.	.	.			.	40	.							.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100
		103	.	.	.	.	.				.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.				.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.
Predicted Secondary structure								.	.	.																																																		.	.	.
Query SS confidence								.	.	.																																																		.	.	.
Query Sequence		I	A	F	S	D	K	.	.	.	L	Y	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	.	.	.	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R
Query Conservation								.	.	.																																																		.	.	.
Alig confidence								.	.	.																																																		.	.	.
Template Conservation
Template Sequence		D	L	P	V	V	S	V	A	S	V	V	R	S	P	L	N	H	V	M	F	L	A	E	Q	D	F	D	S	P	A	D	L	V	G	L	T	V	G	Y	P	G	I	P	V	N	E	P	I	L	K	T	M	V	E	A	A	G	G	D	Y	E	Q	V	H	L	M	D	V	G	F	E	L	G	A	S	I	V	S	G	R
Template Known Secondary structure		T												S									G	G	G			S	S	G	G	G	G	T	T	S						S		T	T												T	T			G	G	G							T	T									S	S
Template Predicted Secondary structure
Template SS confidence
		101	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180
		177	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.					.	.	.					.	.	230	.	.	.	.	.	.	.	.	.	240	.	.		.	.	.	.	.
Predicted Secondary structure																																																		.	.	.	.				.	.	.	.																.
Query SS confidence																																																		.	.	.	.				.	.	.	.																.
Query Sequence		L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	.	.	.	D	A	E	.	.	.	.	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	.	G	T	Y	D	K
Query Conservation																																																		.	.	.	.				.	.	.	.																.
Alig confidence																																							.	.										.	.	.	.				.	.	.	.																.
Template Conservation																																							.	.
Template Sequence		A	D	A	V	V	G	T	Y	I	N	H	E	Y	P	V	L	K	H	E	G	H	D	I	S	Y	F	N	P	V	D	Y	G	V	P	E	Y	D	.	.	E	L	V	L	I	S	N	E	A	Y	V	E	E	S	G	E	V	L	A	A	F	W	R	A	A	L	K	G	Y	E	W	M	V	E	N	P	D	E	A	L	N
Template Known Secondary structure		S	S							T	T	T								T	T								G	G	G	T	T						.	.	S																																		S
Template Predicted Secondary structure																																							.	.
Template SS confidence
		181	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.			.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.
		248	.	250	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	K	Y	F	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	L	L	T	N	Q	D
Template Known Secondary structure						T	S
Template Predicted Secondary structure
Template SS confidence
		259	260	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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