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Job DescriptionP09551
Confidence100.00%DateThu Jan 5 11:02:25 GMT 2012
Rank6Aligned Residues242
% Identity27%Templatec3hv1A_
PDB info PDB header:transport proteinChain: A: PDB Molecule:polar amino acid abc uptake transporter substrate PDBTitle: crystal structure of a polar amino acid abc uptake2 transporter substrate binding protein from streptococcus3 thermophilus
Resolution1.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   14.....20. ........30.........40.........50.........60.........70.........80.........90.
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Query Sequence  LSTAASSY. . AALPETVRIGTDTTYAPFSSKDAKGDFVGFDIDLGNEMCKRMQVKCTWVASDFDALIPSLKAKKIDAIIS
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Template Sequence  FATQKDQWQTYTKEKKIKIGFDATFVPXGYEEKDGSYIGFDIDLANAVFKLYGIDVEWQAIDWDXKETELKNGTIDLIWN
Template Known Secondary structure  TGGGS

T
TTTT
TTS

TTT


GGGTS
S
S
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   30.........40.........50.........60.........70.........80.........90.........100.........
 
   92.......100.........110.........120.........130.........140.........150 .........160.......
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Query Sequence  SLSITDKRQQEIAFSDKLYAADSRLIAAKGSPIQPTLDSLKGKHVGVLQGSTQEAYANE. . . . TWRSKGVDVVAYANQDL
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Template Conservation                                                  
                      
    
   
Template Sequence  GYSVTDERKQSADFTEPYXVNEQVLVTKKSSGIDSVAGXAGKTLGAQAGSSGYDAFNASPKILKDVVANQKVVQYSTFTQ
Template Known Secondary structure  S
B

TT





GGG


SSGGGTT

TT

TTTTTTTSGGG
SS
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   110.........120.........130.........140.........150.........160.........170.........180.........
 
   168.170.........180.........190.........200.........210.........220.........230.........240.......
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Query Sequence  VYSDLAAGRLDAALQDEVAASEGFLKQPAGKDFAFAGSSVKDKKYFGDGTGVGLRKDDAELTAAFNKALGELRQDGTYDK
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Template Sequence  ALIDLNSGRIDGLLIDRVYANYYLEKSGVLDQY. . . . . NVXPAGYEGESFAVGARKVDKTLIKKINQGFETLYKNGEFQK
Template Known Secondary structure  TS
STT
GGG.....
SS




TT
T
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   190.........200.........210.........220.. .......230.........240.........250.........260....
 
   248.250.........260
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Query Sequence  MAKKYFDFNVYGD
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Template Sequence  ISNKWFGEDVATD
Template Known Secondary structure  SS



T
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   265....270.......
 
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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
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