Job Description P09551 Confidence 82.60% Date Thu Jan 5 11:02:25 GMT 2012 Rank 76 Aligned Residues 183 % Identity 16% Template c3b50A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:sialic acid-binding periplasmic protein siap; PDBTitle: structure of h. influenzae sialic acid binding protein2 bound to neu5ac. Resolution 1.40 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	F	.	.	.	.	.	.	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		M	F	A	K	E	V	K	E	K	S	Q	G	K	I	E	I	S	L	Y	P	S	S	Q	L	G	D	D	R	A	M	L	K	Q	L	K	D	G	S	L	D	F	T	F	A	E	S	A	R	F	Q	L	F	Y	P	E	A	A	V	F	A	L	P	Y	V	I	S	N	Y	N	V	A	Q	K	A	L	F	D	T	E	F
Template Known Secondary structure											T	T	T	S								T	T	T	T													T	S								G	G	G	G	G	G	T	S	G	G	G	G	G	G	G	S	T	T	T	S		S										S	S
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
																				111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																																														.	.	.	.	.
Template Conservation																																																																	.	.	.	.	.
Template Sequence		G	K	D	L	I	K	K	M	D	K	D	L	G	V	T	L	L	S	Q	A	Y	N	G	T	R	Q	T	T	S	N	R	A	I	N	S	I	A	D	M	K	G	L	K	L	R	V	P	N	A	A	T	N	L	A	Y	A	K	Y	V	G	A	S	P	.	.	.	.	.	T	P	M	A	F	S	E	V	Y	L	A	L
Template Known Secondary structure																															S	S				S	G	G	G	G	T	T							S											T	T				.	.	.	.	.					G	G	G
Template Predicted Secondary structure																																																																	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.						.	.	.	.	170	.	.	.	.	.	.	.
		173	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.
Predicted Secondary structure																																																						.	.	.	.	.
Query SS confidence																																																						.	.	.	.	.
Query Sequence		A	A	G	R	L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	.	.	.	.	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D	K
Query Conservation																																																						.	.	.	.	.
Alig confidence																														.	.	.	.	.	.	.	.																	.	.	.	.	.																		.	.
Template Conservation																														.	.	.	.	.	.	.	.																																							.	.
Template Sequence		Q	T	N	A	V	D	G	Q	E	N	P	L	A	A	V	Q	A	Q	K	F	Y	E	V	Q	K	F	L	A	.	.	.	.	.	.	.	.	M	T	N	H	I	L	N	D	Q	L	Y	L	V	S	N	E	T	Y	K	E	L	P	E	D	L	Q	K	V	V	K	D	A	A	E	N	A	A	K	.	.	Y	H	T	K
Template Known Secondary structure			T	T	S	S	S												T	T	G	G	G	S		S				.	.	.	.	.	.	.	.																			T	T	S																		.	.
Template Predicted Secondary structure																														.	.	.	.	.	.	.	.																																							.	.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.									.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.			.	.	.	.
		248	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		M	A	K	K
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	F	V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		248	.	250	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions