Job Description P09551 Confidence 99.95% Date Thu Jan 5 11:02:25 GMT 2012 Rank 33 Aligned Residues 221 % Identity 18% Template c2v3tA_ PDB info PDB header:receptor Chain: A: PDB Molecule:glutamate receptor delta-2 subunit synonym PDBTitle: structure of the ligand-binding core of the ionotropic2 glutamate receptor-like glurdelta2 in the apo form Resolution 2.75 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.						40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.									.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.
Predicted Secondary structure																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query SS confidence																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Query Sequence		E	T	V	R	I	G	T	D	T	T	Y	A	P	F	.	.	.	.	.	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	.	.	.	.	.	.	.	.	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S
Query Conservation																.	.	.	.	.																																			.	.	.	.	.	.	.	.
Alig confidence										.						.	.	.	.	.																																			.	.	.	.	.	.	.	.
Template Conservation										.
Template Sequence		V	V	L	R	V	V	T	V	.	L	E	E	P	F	V	X	V	S	E	N	V	L	G	K	P	K	K	Y	Q	G	F	S	I	D	V	L	D	A	L	S	N	Y	L	G	F	N	Y	E	I	Y	V	A	P	D	H	K	Y	G	S	P	T	W	N	G	L	V	G	E	L	V	F	K	R	A	D	I	G	I	S	A
Template Known Secondary structure										.		B	T	T	T	B							T	T	S						S														T									T	T																	T	T	S		S
Template Predicted Secondary structure										.
Template SS confidence
		3	.	.	.	.	.	.	10		.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		93	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	T	I	T	P	D	R	E	N	V	V	D	F	T	T	R	Y	X	D	Y	S	V	G	V	L	L	R	R	S	I	Q	S	L	Q	D	L	S	K	Q	T	D	I	P	Y	G	T	V	L	D	S	A	V	Y	Q	H	V	R	X	K	G	L	N	P	S	X	Y	S	Q	X	W	R	X	I	N	N	N	V	L	E	S
Template Known Secondary structure												S						S															S					T	T			S	S					B	T	T	S											T																	B
Template Predicted Secondary structure
Template SS confidence
		86	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.
		173	.	.	.	.							.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.	.	.
Query SS confidence							.	.	.	.	.	.
Query Sequence		A	A	G	R	L	.	.	.	.	.	.	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D
Query Conservation							.	.	.	.	.	.
Alig confidence							.	.	.	.	.	.																								.	.	.	.	.	.	.	.																			.
Template Conservation																																				.	.	.	.	.	.	.	.																			.
Template Sequence		Q	A	G	I	Q	K	V	K	Y	G	N	Y	A	F	V	W	D	A	A	V	L	E	Y	V	A	I	N	D	P	D	C	S	F	Y	.	.	.	.	.	.	.	.	T	V	T	V	A	D	R	G	Y	G	I	A	L	Q	H	G	S	P	.	Y	R	D	V	F	S	Q	R	I	L	E	L	Q	Q	S	G	D	X	D
Template Known Secondary structure											S	S																T		T	T					.	.	.	.	.	.	.	.						S									T	T		S	.	S															T
Template Predicted Secondary structure																																				.	.	.	.	.	.	.	.																			.
Template SS confidence
		178	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.									.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.		230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.
		247	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	M	A	K	K	Y	F	D	F	N
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	L	K	H	K	W	W	P	K	N
Template Known Secondary structure								S			S
Template Predicted Secondary structure
Template SS confidence
		251	.	.	.	.	.	.	.	.	260

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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