Job Description P09551 Confidence 99.96% Date Thu Jan 5 11:02:25 GMT 2012 Rank 30 Aligned Residues 213 % Identity 15% Template c2pyyB_ PDB info PDB header:transport protein Chain: B: PDB Molecule:ionotropic glutamate receptor bacterial homologue; PDBTitle: crystal structure of the glur0 ligand-binding core from nostoc2 punctiforme in complex with (l)-glutamate Resolution 2.10 Å

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		27	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	V	R	I	G	T	D	T	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E	I	A	F	S
Query Conservation
Alig confidence									.								.	.	.	.
Template Conservation									.								.	.	.	.
Template Sequence		P	L	L	V	A	T	R	.	V	I	P	P	F	V	L	.	.	.	.	S	N	L	S	G	F	S	I	D	L	W	R	S	I	A	T	Q	I	G	I	E	S	K	L	I	E	Y	S	S	V	P	E	L	I	S	A	I	K	D	N	K	V	N	L	G	I	A	A	I	S	I	T	A	E	R	E	Q	N	F	D	F
Template Known Secondary structure									.		B	T	T	T	B	B	.	.	.	.				B	S														T									S	S										T	T	S	S	S				S	S		B									S
Template Predicted Secondary structure									.								.	.	.	.
Template SS confidence
		4	.	.	.	.	.	10		.	.	.	.	.	.	.					.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
		107	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	K	L	Y	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D	E	V	A
Query Conservation
Alig confidence																																												.	.	.	.	.
Template Conservation																																												.	.	.	.	.
Template Sequence		S	L	P	I	F	A	S	G	L	Q	I	M	V	R	N	G	D	I	R	S	I	D	D	L	P	G	K	V	V	A	T	T	A	G	S	T	A	A	T	Y	L	R	.	.	.	.	.	E	H	H	I	S	V	L	E	V	P	K	I	E	E	A	Y	K	A	L	Q	T	K	K	A	D	A	V	V	F	D	A	P	V
Template Known Secondary structure			S		S																S	G	G	G		T	T	S						T	T	S								.	.	.	.	.		T	T							S	S										T	T	S	S	S
Template Predicted Secondary structure																																												.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.						.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D	K	M	A	K	K	Y	F	D	F	N
Query Conservation
Alig confidence																					.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.
Template Sequence		L	L	F	Y	A	A	N	E	G	K	G	K	V	E	I	V	G	S	I	.	.	.	.	.	.	.	L	R	E	E	S	Y	G	I	I	L	P	N	N	S	P	Y	R	K	P	I	N	Q	A	L	L	N	L	K	E	N	G	T	Y	Q	S	L	Y	D	K	W	F	D	P	K
Template Known Secondary structure							T	T	T	T	T	T	T								.	.	.	.	.	.	.												T	T		T	T														T	S										S		G	G
Template Predicted Secondary structure																					.	.	.	.	.	.	.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.								.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions