Job Description P09551 Confidence 74.46% Date Thu Jan 5 11:02:25 GMT 2012 Rank 84 Aligned Residues 183 % Identity 12% Template c2pfzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: crystal structure of dctp6, a bordetella pertussis2 extracytoplasmic solute receptor binding pyroglutamic acid Resolution 1.80 Å

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		54	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.							.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110
Predicted Secondary structure																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		D	L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	F	.	.	.	.	.	.	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																							.	.	.	.	.	.																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	F	V	K	D	V	D	S	L	S	G	G	K	L	K	I	T	L	H	N	N	A	S	L	Y	K	A	P	E	I	K	R	A	V	Q	G	N	Q	A	Q	I	G	E	I	L	L	T	N	F	A	N	E	D	P	V	Y	E	L	D	G	L	P	F	L	A	T	G	Y	D	A	S	F	K	L	Y	Q	A	Q	K	P
Template Known Secondary structure												T	T	S								T	T	S	S	S		G	G	G							T	T	S	S	S						G	G	G	G	T	T	T		G	G	G	T	G	G	G	S	T	T	S			S
Template Predicted Secondary structure
Template SS confidence
		22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.
																	111	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	A	D	S	R	L	I	A	A	K	G	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.																.	.	.	.	.
Template Conservation																																														.																.	.	.	.	.
Template Sequence		F	L	E	K	K	L	A	S	Q	G	M	M	L	L	Y	S	V	A	W	P	P	Q	G	I	F	A	N	R	D	I	K	Q	V	S	D	M	K	G	L	K	W	R	A	Y	.	S	P	V	T	A	K	I	A	E	L	V	G	A	Q	P	.	.	.	.	.	V	T	V	Q	Q	A	E	L	A	Q	A	M	A	T	G
Template Known Secondary structure									T	T	T																	S	S			S	S	G	G	G	G	T	T						S	.	S											T				.	.	.	.	.					G	G	G							T	T
Template Predicted Secondary structure																																														.																.	.	.	.	.
Template SS confidence
		102	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.		.	.	.	.	150	.	.	.	.	.	.	.	.	.	160						.	.	.	.	.	.	.	.	.	170	.	.	.	.	.
		176	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.						.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250
Predicted Secondary structure																																																			.	.	.	.	.
Query SS confidence																																																			.	.	.	.	.
Query Sequence		R	L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	.	.	.	.	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D	K	M	A	K
Query Conservation																																																			.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.																													.	.	.	.	.																		.	.
Template Conservation															.	.	.	.	.	.	.	.																																																			.	.
Template Sequence		V	I	D	S	Y	M	S	S	G	S	T	G	F	.	.	.	.	.	.	.	.	D	T	K	T	Y	E	Y	I	K	K	F	Y	D	T	E	A	W	L	P	K	N	A	V	L	V	N	K	K	A	F	D	A	L	D	P	A	T	Q	Q	A	L	K	K	A	G	A	Q	A	E	E	.	.	R	G	W	K	L	S	Q
Template Known Secondary structure		S		S											.	.	.	.	.	.	.	.		T	T	G	G	G	T																									T	S																		.	.
Template Predicted Secondary structure															.	.	.	.	.	.	.	.																																																			.	.
Template SS confidence
		176	.	.	.	180	.	.	.	.	.	.	.	.									.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.			.	240	.	.	.	.	.
		251	.
Predicted Secondary structure
Query SS confidence
Query Sequence		K	Y
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	K
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		246	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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