Job Description P09551 Confidence 97.46% Date Thu Jan 5 11:02:25 GMT 2012 Rank 50 Aligned Residues 217 % Identity 14% Template c2g29A_ PDB info PDB header:transport protein Chain: A: PDB Molecule:nitrate transport protein nrta; PDBTitle: crystal structure of the periplasmic nitrate-binding2 protein nrta from synechocystis pcc 6803 Resolution 1.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		22	.	.	.	.	.	.	.	30	.	.	.	.			.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.		.	.	.	.	70	.	.		.	.	.	.	.	.	.	80	.	.					.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure															.	.																																.								.											.	.	.	.
Query SS confidence															.	.																																.								.											.	.	.	.
Query Sequence		A	A	L	P	E	T	V	R	I	G	T	D	T	.	.	T	Y	A	P	F	S	S	K	D	A	K	G	D	F	V	G	F	D	I	D	L	G	N	E	M	C	K	R	M	Q	V	.	K	C	T	W	V	A	S	.	D	F	D	A	L	I	P	S	L	K	.	.	.	.	A	K	K	I	D	A	I	I	S	S	L
Query Conservation															.	.																																.								.											.	.	.	.
Alig confidence															.	.													.	.	.	.	.	.	.	.	.	.	.	.								.								.											.	.	.	.
Template Conservation																													.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		A	P	E	V	T	T	A	K	L	G	F	I	A	L	T	D	A	A	P	L	I	I	A	K	E	K	G	.	.	.	.	.	.	.	.	.	.	.	.	F	Y	A	K	Y	G	M	P	D	V	E	V	L	K	Q	A	S	W	G	T	T	R	D	N	L	V	L	G	S	A	S	G	G	I	D	G	A	H	I	L	T
Template Known Secondary structure				S		S								S	S	G	G	G									T	T	.	.	.	.	.	.	.	.	.	.	.	.					T	T		T	T							S													G	G	G	T	S		S						T
Template Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		58	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.													.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.																				.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.
Predicted Secondary structure																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query SS confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Query Sequence		S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	A	A	D	S	R	L	I	A	A	K	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	P	I	Q	P	T	L	D	S	L	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	N	E	T	.	.	.
Query Conservation																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Alig confidence																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																															.	.	.
Template Conservation
Template Sequence		P	M	P	Y	L	I	T	M	G	T	V	T	D	G	K	P	T	P	M	Y	I	L	A	R	L	N	V	N	G	Q	G	I	Q	L	G	N	N	Y	K	D	L	K	V	G	T	D	A	A	P	L	K	E	A	F	A	K	V	T	D	P	K	V	A	M	T	F	P	G	G	T	H	D	M	W	I	R	Y	W	L	A
Template Known Secondary structure											T	T	S	S	S													B	S								G	G	G	G	G	G				S			T	T							T	S	S	S						S	S	T	T	S
Template Predicted Secondary structure
Template SS confidence
		126	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.
					152	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
Predicted Secondary structure		.	.	.																																																																										.	.	.	.
Query SS confidence		.	.	.																																																																										.	.	.	.
Query Sequence		.	.	.	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D	E	V	A	A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	.	.	.
Query Conservation		.	.	.																																																																										.	.	.	.
Alig confidence		.	.	.																																																		.	.	.	.	.																				.	.	.	.
Template Conservation																																																						.	.	.	.	.
Template Sequence		A	G	G	M	E	P	G	K	D	F	S	T	I	V	V	P	P	A	Q	M	V	A	N	V	K	V	N	A	M	E	S	F	C	V	G	E	P	W	P	L	Q	T	V	N	Q	G	V	G	Y	Q	A	L	.	.	.	.	.	T	T	G	Q	L	W	K	D	H	P	E	K	A	F	G	M	R	A	D	W	V	D	Q
Template Known Secondary structure			T	T			B	T	T	T	B							G	G	G							T	T	S		S						T	T									T	S						.	.	.	.	.		G	G	G	T	B	T	T		B
Template Predicted Secondary structure																																																						.	.	.	.	.
Template SS confidence
		206	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.						.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280
		225	.	.	.	.	230	.	.	.	.	.	.	.	.	.									240	.	.	.	.	.	.	.	.	.	250			.	.	.	.	.	.
Predicted Secondary structure																	.	.	.	.	.	.	.	.												.	.
Query SS confidence																	.	.	.	.	.	.	.	.												.	.
Query Sequence		D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	.	.	.	.	.	.	.	.	R	Q	D	G	T	Y	D	K	M	A	K	.	.	K	Y	F	D	F	N
Query Conservation																	.	.	.	.	.	.	.	.												.	.
Alig confidence																	.	.	.	.	.	.	.	.				.								.	.
Template Conservation																												.
Template Sequence		N	P	K	A	A	K	A	L	L	M	A	V	M	E	A	Q	Q	W	C	D	Q	A	E	N	K	E	.	E	M	C	Q	I	L	S	K	R	E	W	F	K	V	P
Template Known Secondary structure																							G	G	G			.								S	T	T	T	T
Template Predicted Secondary structure																												.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.		.	.	.	310	.	.	.	.	.	.	.	.	.	320	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions