Job Description P09551 Confidence 94.09% Date Thu Jan 5 11:02:25 GMT 2012 Rank 64 Aligned Residues 197 % Identity 9% Template c2dvzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:putative exported protein; PDBTitle: structure of a periplasmic transporter Resolution 2.30 Å

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		55	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.								.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.											.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																					.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Query Sequence		L	G	N	E	M	C	K	R	M	Q	V	K	C	T	W	V	A	S	D	.	.	.	.	.	.	.	F	D	A	L	I	P	S	L	K	A	K	K	I	D	A	I	I	S	S	L	.	.	.	.	.	.	.	.	.	.	S	I	T	D	K	R	Q	Q	E	I	A	F	S	D	K	L	Y	A	A	D	S	R	L	I
Query Conservation																					.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Alig confidence																					.	.	.	.	.	.	.																					.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		V	T	Q	R	X	S	Q	E	L	G	Q	P	X	V	V	E	N	K	G	G	A	G	G	A	I	G	A	S	E	A	A	R	A	E	P	D	G	Y	T	L	S	I	A	T	V	S	T	X	A	V	N	P	A	C	R	P	K	D	L	P	Y	D	P	I	K	D	F	Q	P	V	T	N	F	A	N	T	A	N	V	V
Template Known Secondary structure											T	S										G	G	G										S		T	T	S	S											T						S	T	T	T		S			T	T	T	S
Template Predicted Secondary structure
Template SS confidence
		40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.
		118	.	120	.	.	.	.	.	.	.	.	.	130	.								.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.					.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.
Predicted Secondary structure																.	.	.	.	.	.	.																		.	.	.	.
Query SS confidence																.	.	.	.	.	.	.																		.	.	.	.
Query Sequence		A	A	K	G	S	P	I	Q	P	T	L	D	S	L	.	.	.	.	.	.	.	K	G	K	H	V	G	V	L	Q	G	S	T	Q	E	A	Y	A	.	.	.	.	N	E	T	W	R	S	K	G	V	D	V	V	A	Y	A	N	Q	D	L	V	Y	S	D	L	A	A	G	R	L	D	A	A	L	Q	D	E	V	A
Query Conservation																.	.	.	.	.	.	.																		.	.	.	.
Alig confidence																.	.	.	.	.	.	.																		.	.	.	.
Template Conservation
Template Sequence		A	V	N	P	K	F	P	A	K	D	F	K	G	F	L	E	E	L	K	K	N	P	G	K	Y	S	Y	G	S	S	G	T	C	G	V	L	H	L	X	G	E	S	F	K	X	A	T	G	T	D	I	V	H	V	P	Y	K	G	S	G	P	A	V	A	D	A	V	G	G	Q	I	E	L	I	F	D	N	L	P	S
Template Known Secondary structure					T	T	S	S		S	S										T	S	T	T	T						S		T	T	S														T									S	S											T	S	S	S
Template Predicted Secondary structure
Template SS confidence
		120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.
		187	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.														.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.		.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query SS confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Query Sequence		A	S	E	G	F	L	K	Q	P	A	G	K	D	F	A	F	A	G	S	S	V	K	.	.	.	.	.	.	.	.	.	.	.	.	.	D	K	K	Y	F	G	D	G	T	G	V	G	L	R	K	D	.	D	A	E	L	T	A	A	F	N	K	A	L	G	E	L	R	Q	D	G	T	Y	D	K	M	A	K	K
Query Conservation																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Alig confidence																								.	.	.	.	.	.	.	.	.	.	.	.	.																	.
Template Conservation
Template Sequence		S	X	P	Q	I	Q	A	G	K	L	R	A	X	A	I	A	W	P	T	R	I	D	A	I	K	D	V	P	T	F	A	D	A	G	F	P	V	L	N	Q	P	V	W	Y	G	L	L	A	P	K	G	T	P	X	D	V	V	N	K	L	R	D	A	A	V	V	A	L	K	D	P	K	V	I	K	A	L	D	D
Template Known Secondary structure								T	T	S	S							S	S	S			G	G	G	T	T	S		B	T	T	T	T	T		G	G	G												T	T																		T
Template Predicted Secondary structure
Template SS confidence
		200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions