Job Description P0ACA3 Confidence 100.00% Date Thu Jan 5 11:17:44 GMT 2012 Rank 1 Aligned Residues 206 % Identity 83% Template c1yy7A_ PDB info PDB header:transcription Chain: A: PDB Molecule:stringent starvation protein a; PDBTitle: crystal structure of stringent starvation protein a (sspa),2 an rna polymerase-associated transcription factor Resolution 2.02 Å

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		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	A	N	K	R	S	V	M	T	L	F	S	G	P	T	D	I	Y	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	F	E	I	E	H	V	E	K	D	N	P	P	Q	D	L	I	D	L	N	P	N	Q	S	V	P	T	L	V	D	R	E	L	T	L	W	E	S	R	I	I	M	E	Y	L	D	E	R	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	A	N	K	R	S	V	M	T	L	F	S	G	P	T	D	I	F	S	H	Q	V	R	I	V	L	A	E	K	G	V	S	V	E	I	E	Q	V	E	A	D	N	L	P	Q	D	L	I	D	L	N	P	Y	R	T	V	P	T	L	V	D	R	E	L	T	L	Y	E	S	R	I	I	M	E	Y	L	D	E	R	F
Template Known Secondary structure			G	G	G	S	S	S							T	T															T										T	T	S										T	T			S	S					T	T					S
Template Predicted Secondary structure
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	H	P	P	L	M	P	V	Y	P	V	A	R	G	E	S	R	L	Y	M	H	R	I	E	K	D	W	Y	T	L	M	N	T	I	I	N	G	S	A	S	E	A	D	A	A	R	K	Q	L	R	E	E	L	L	A	I	A	P	V	F	G	Q	K	P	Y	F	L	S	D	E	F	S	L	V	D	C	Y	L	A	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		P	H	P	P	L	M	P	V	Y	P	V	A	R	G	S	S	R	L	M	M	H	R	I	E	H	D	W	Y	S	L	L	Y	K	I	E	Q	G	N	A	Q	E	A	E	A	A	R	K	Q	L	R	E	E	L	L	S	I	A	P	V	F	N	E	T	P	F	F	M	S	E	E	F	S	L	V	D	C	Y	L	A	P
Template Known Secondary structure			S	S			S		S	S																		T										S																			T	T	T						S	B	T	T	B	S	S
Template Predicted Secondary structure
Template SS confidence
		84	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	L	W	R	L	P	Q	L	G	I	E	F	S	G	P	G	A	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	S	F	L	A	S	L	T	E	A	E	R	E	M	R	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	W	R	L	P	V	L	G	I	E	F	T	G	A	G	S	K	E	L	K	G	Y	M	T	R	V	F	E	R	D	A	F	L	A	S	L	T	E	A	E	R	E	M	H	L
Template Known Secondary structure					T	G	G	G	G	T					S	T	T													T	S													G	G	G
Template Predicted Secondary structure
Template SS confidence
		164	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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