|   |
12 | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | |
|
. | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |  |
|
|
|
|
| . | . |
|
|  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|
|
|  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
T | L | F | S | G | P | T | D | I | Y | S | H | Q | V | R | I | V | L | A | E | K | G | V | S | F | E | I | E | H | V | E | K | D | N | . |
. |
P | P | Q | D | L | I | D | L | N | P | N | Q | S | V | P | T | L | V | D | R | E | L | T | L | W | E | S | R | I | I | M | E | Y | L | D | E | R | F | P | H | P | P | L | M |
Query Conservation |   |
  |
|
|   |   |   |   |
|
|   |
|   |
|
|
|
|   |
|   |   |   |
|
|   |   |
|   |   |   |
|   |   |   |   | . | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
|
|   |
|   |   |   |   |
|   |
|   |   |
|
|
|   |
|   |   |   |
|
|   |
|
|   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |
|
|   |
|   |   |   |
|   |   |
|   |
|
|   |
|
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
K | L | H | Y | P | N | G | R | G | R | M | E | S | V | R | W | V | L | A | A | A | G | V | E | F | D | E | E | F | L | E | T | K | E | Q | L | Y | K | L | Q | D | G | N | H | L | L | F | Q | Q | V | P | M | V | E | I | D | G | M | K | L | V | Q | T | R | S | I | L | H | Y | I | A | D | K | H | N | L | F | G | K | N |
Template Known Secondary structure |   |
 |  |  |  |  | S | S |
| T | T | T |  |  |  |  |  |  |  |  |  | T | T |
|
|
|  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  | T | T |
| S | T | T | S |
| S |
|  |  |  |  | T | T |  |  |  |  | S |  |  |  |  |  |  |  |  |  |  |  | T | T |
| S |
| S | S |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |
|
|
|
|
|
|
|
|
|  |  |  |  |
|
|  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
6 | . | . | . | 10 | . | . | . | . | . | . | . | . | . | 20 | . | . | . | . | . | . | . | . | . | 30 | . | . | . | . | . | . | . | . | . | 40 | . | . | . | . | . | . | . | . | . | 50 | . | . | . | . | . | . | . | . | . | 60 | . | . | . | . | . | . | . | . | . | 70 | . | . | . | . | . | . | . | . | . | 80 | . | . | . | . | . |
  |
  |   |
90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | |
110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | |
|
. | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . | . |
Predicted Secondary structure |   |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | . | . |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
P | V | Y | P | V | A | R | G | E | S | R | L | Y | M | H | R | I | E | K | D | . |
W | Y | T | L | M | N | T | I | I | N | G | S | A | S | E | A | D | A | A | R | K | Q | L | R | E | E | L | L | A | I | A | P | V | F | G | . |
. |
Q | K | P | Y | F | L | S | D | E | F | S | L | V | D | C | Y | L | A | P | L | L | W |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   | . |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |
|   | . | . |   |   |   |   |
|   |
|   |   |   |
|   |
|
|
|   |
|   |   |   |
|   |
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |
|
|   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |   |
|   |
|
|   |   |
|   |   |   |
|   |
Template Sequence |   |
L | K | E | R | T | L | I | D | M | Y | V | E | G | T | L | D | L | L | E | L | L | I | M | H | P | F | L | K | P | D | D | Q | Q | K | E | V | V | N | M | A | Q | K | A | I | I | R | Y | F | P | V | F | E | K | I | L | R | G | H | G | Q | S | F | L | V | G | N | Q | L | S | L | A | D | V | I | L | L | Q | T | I | L |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | G | G | G | S |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T |  |  |  |  |  |  |  |  |  | T | T |
|
| S | S | S | S | T | T | S |
|
|  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
86 | . | . | . | 90 | . | . | . | . | . | . | . | . | . | 100 | . | . | . | . | . | . | . | . | . | 110 | . | . | . | . | . | . | . | . | . | 120 | . | . | . | . | . | . | . | . | . | 130 | . | . | . | . | . | . | . | . | . | 140 | . | . | . | . | . | . | . | . | . | 150 | . | . | . | . | . | . | . | . | . | 160 | . | . | . | . | . |
  |
  |   |
167 | . | . | 170 | . | . | . | . | . | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | |
|
|
|
|
|
|
|
. | . | . | . | . | . | . | . | . | 210 | . |
Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|
|
|  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
| . | . | . | . | . | . | . | . |
|
|
|  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
. |
. |
. |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
R | L | P | Q | L | G | I | E | F | S | G | P | G | A | K | E | L | K | G | Y | M | T | R | V | F | E | R | D | S | F | L | A | S | L | . |
. |
. |
. |
. |
. |
. |
. |
T | E | A | E | R | E | M | R | L | G | R |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|   |   |
|   |   |
|   |   |   |   |
|   |   |   |   |   |
| . | . | . | . | . | . | . | . |   |   |   |   |   |   |   |   |   |   |   |
Alig confidence |   |
|
|
|
|
|
|
|
|
| . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . | . | . | . | . | . |
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   | . |   |   |   |   |
|   |
|   |   |   |   |   |
|   |   |   |   |
|   |
|   |   |   |
|   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |
Template Sequence |   |
A | L | E | E | K | I | P | N | I | . |
L | S | A | F | P | F | L | Q | E | Y | T | V | K | L | S | N | I | P | T | I | K | R | F | L | E | P | G | S | K | K | K | P | P | P | D | E | I | Y | V | R | T | V | Y |
Template Known Secondary structure |   |
 |  |  |  |  | S | T | T | G | . | G | G | G |
|  |  |  |  |  |  |  |  |  |  |  |  | S |  |  |  |  |  |  |  | S | S | S | S | S |
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |
|
|
|
|  | . |  |  |
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |
|
|
|
|
|
|
|
|
|
|  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
166 | . | . | . | 170 | . | . | . | . | |
. | . | . | . | . | 180 | . | . | . | . | . | . | . | . | . | 190 | . | . | . | . | . | . | . | . | . | 200 | . | . | . | . | . | . | . | . | . | 210 | . | . | . | . | . | . | . |
  |