Job Description P08368 Confidence 76.24% Date Thu Jan 5 11:01:13 GMT 2012 Rank 209 Aligned Residues 92 % Identity 15% Template c3dm5A_ PDB info PDB header:rna binding protein, transport protein Chain: A: PDB Molecule:signal recognition 54 kda protein; PDBTitle: structures of srp54 and srp19, the two proteins assembling2 the ribonucleic core of the signal recognition particle3 from the archaeon pyrococcus furiosus. Resolution 2.51 Å

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		2	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.					.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																									.	.	.	.	.	.	.																				.	.	.	.
Query SS confidence													.	.	.																									.	.	.	.	.	.	.																				.	.	.	.
Query Sequence		Q	R	E	T	V	W	L	V	E	D	E	.	.	.	Q	G	I	A	D	T	L	V	Y	M	L	Q	Q	E	G	F	A	V	E	V	F	E	R	G	.	.	.	.	.	.	.	L	P	V	L	D	K	A	R	K	Q	V	P	D	V	M	I	L	D	V	.	.	.	.	G	L	P	D	I	S	G	F	E	L	C	R
Query Conservation													.	.	.																									.	.	.	.	.	.	.																				.	.	.	.
Alig confidence													.	.	.																									.	.	.	.	.	.	.																				.	.	.	.
Template Conservation
Template Sequence		R	G	Y	K	V	G	V	V	C	S	D	T	W	R	P	G	A	Y	H	Q	L	R	Q	L	L	D	R	Y	H	I	E	V	F	G	N	P	Q	E	K	D	A	I	K	L	A	K	E	G	V	D	Y	F	K	S	K	G	V	D	I	I	I	V	D	T	A	G	R	H	K	E	D	K	A	L	I	E	E	M	K	Q
Template Known Secondary structure		T	T											S	S	T											G	G	G	T							T	T																		T	T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		127	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	L	H	P	A	L	P	V	L	F	L	T	A	R	S	E	E	V	D	R	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		I	S	N	V	I	H	P	H	E	V	I	L	V	I	D	G	T	I	G	Q	Q	A	Y	N	Q	A
Template Known Secondary structure									S								G	G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		207	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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