Job Description P08368 Confidence 61.97% Date Thu Jan 5 11:01:13 GMT 2012 Rank 256 Aligned Residues 92 % Identity 22% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

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		2	.	.	.	.	.	.	.	10	.	.				.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.								.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.					.	.	.	.	.	60	.	.	.	.	.	.	.
Predicted Secondary structure													.	.	.																									.	.	.	.	.	.	.																			.	.	.	.
Query SS confidence													.	.	.																									.	.	.	.	.	.	.																			.	.	.	.
Query Sequence		Q	R	E	T	V	W	L	V	E	D	E	.	.	.	Q	G	I	A	D	T	L	V	Y	M	L	Q	Q	E	G	F	A	V	E	V	F	E	R	G	.	.	.	.	.	.	.	L	P	V	L	D	K	A	R	K	Q	V	P	D	V	M	I	L	D	.	.	.	.	V	G	L	P	D	I	S	G	F	E	L	C	R
Query Conservation													.	.	.																									.	.	.	.	.	.	.																			.	.	.	.
Alig confidence													.	.	.																									.	.	.	.	.	.	.																			.	.	.	.
Template Conservation
Template Sequence		K	G	R	R	P	L	L	V	A	A	D	T	Q	R	P	A	A	R	E	Q	L	R	L	L	G	E	K	V	G	V	P	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R
Template Known Secondary structure		T	T										S	S																T								T	T																		T		S										S	S
Template Predicted Secondary structure
Template SS confidence
		125	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		68	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	L	A	L	H	P	A	L	P	V	L	F	L	T	A	R	S	E	E	V	D	R	L	L	G
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	K	E	V	L	G	P	D	E	V	L	L	V	L	D	A	M	T	G	Q	E	A	L	S	V	A
Template Known Secondary structure									S								S	S	S		S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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