Return to main results Retrieve Phyre Job Id

Job DescriptionP08368
Confidence31.60%DateThu Jan 5 11:01:13 GMT 2012
Rank400Aligned Residues93
% Identity10%Templatec2g1uA_
PDB info PDB header:transport proteinChain: A: PDB Molecule:hypothetical protein tm1088a; PDBTitle: crystal structure of a putative transport protein (tm1088a) from2 thermotoga maritima at 1.50 a resolution
Resolution1.50 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   2.......10.........20.........30........ .40.........50.........
Predicted Secondary structure 










......................









Query SS confidence 




































. . . . . . . . . . . . . . . . . . . . . .




















Query Sequence  QRETVWLVEDEQGIADTLVYMLQQEGFAVEVFERGLP. . . . . . . . . . . . . . . . . . . . . . VLDKARKQVPDVMILDVGLPD
Query Conservation   
 







      
   
   
  
  
     ......................

        






  
 
Alig confidence 











.























......................




















Template Conservation      


 
 
 . 
  

  
   
  



                     
      
    
  
  

     
 
Template Sequence  KSKYIVIFGCGR. LGSLIANLASSSGHSVVVVDKNEYAFHRLNSEFSGFTVVGDAAEFETLKECGMEKADMVFAFTNDDS
Template Known Secondary structure 




S.TT
S
GGGGGGS
TT

SS
TTSTTTGGG
S
SS
Template Predicted Secondary structure 





.


















Template SS confidence 















































































   6...10....... ..20.........30.........40.........50.........60.........70.........80....
 
   60.........70.........80.........90......
Predicted Secondary structure 




























Query SS confidence 




































Query Sequence  ISGFELCRQLLALHPALPVLFLTARSEEVDRLLGLEI
Query Conservation    
      

       

 

              
Alig confidence 

.

































Template Conservation   
.       
       

           
   
 
Template Sequence  TN. FFISMNARYMFNVENVIARVYDPEKIKIFEENGI
Template Known Secondary structure  .TS

S
SSGGGTTT
Template Predicted Secondary structure  .








Template SS confidence 




































   85. ...90.........100.........110.........120
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions