Job Description P08368 Confidence 24.20% Date Thu Jan 5 11:01:13 GMT 2012 Rank 469 Aligned Residues 49 % Identity 16% Template c1l9uH_ PDB info PDB header:transcription Chain: H: PDB Molecule:sigma factor siga; PDBTitle: thermus aquaticus rna polymerase holoenzyme at 4 a2 resolution Resolution 4.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		154	.	.	.	.	.	160	.	.	.	.	.	.	.		.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure																.
Query SS confidence																.
Query Sequence		A	L	T	R	Y	E	F	L	L	L	K	T	L	L	.	K	S	P	G	R	V	W	S	R	Q	Q	L	M	D	S	V	W	E	D	A	Q	D	T	Y	D	R	T	V	D	T	H	I	K	T	L	R	A	K	L	R
Query Conservation																.
Alig confidence																.																	.	.	.	.	.
Template Conservation																																	.	.	.	.	.
Template Sequence		K	L	S	E	R	E	A	M	V	L	K	L	R	K	G	L	I	D	G	R	E	H	T	L	E	E	V	G	A	Y	F	.	.	.	.	.	G	V	T	R	E	R	I	R	Q	I	E	N	K	A	L	R	K	L	K
Template Known Secondary structure		S	S		T	T	T	T					T	T	S	S	T	T	S	S										T	T	S	.	.	.	.	.		S
Template Predicted Secondary structure																																	.	.	.	.	.
Template SS confidence
		375	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.						.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions