Job Description P08368 Confidence 100.00% Date Thu Jan 5 11:01:13 GMT 2012 Rank 6 Aligned Residues 217 % Identity 34% Template c1kgsA_ PDB info PDB header:dna binding protein Chain: A: PDB Molecule:dna binding response regulator d; PDBTitle: crystal structure at 1.50 a of an ompr/phob homolog from thermotoga2 maritima Resolution 1.50 Å

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		3	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	E	T	V	W	L	V	E	D	E	Q	G	I	A	D	T	L	V	Y	M	L	Q	Q	E	G	F	A	V	E	V	F	E	R	G	L	P	V	L	D	K	A	R	K	Q	V	P	D	V	M	I	L	D	V	G	L	P	D	I	S	G	F	E	L	C	R	Q	L	L	A	L	H	P	A	L	P	V	L	F	L	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	R	V	L	V	V	E	D	E	R	D	L	A	D	L	I	T	E	A	L	K	K	E	X	F	T	V	D	V	C	Y	D	G	E	E	G	X	Y	X	A	L	N	E	P	F	D	V	V	I	L	D	I	X	L	P	V	H	D	G	W	E	I	L	K	S	X	R	E	S	G	V	N	T	P	V	L	X	L	T
Template Known Secondary structure										S	S														T	T							S	S											S			S						S			S	S	S												T	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		83	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	R	S	E	E	V	D	R	L	L	G	L	E	I	G	A	D	D	Y	V	A	K	P	F	S	P	R	E	V	C	A	R	V	R	T	L	L	R	R	V	K	K	F	S	T	P	S	P	V	I	R	I	G	H	F	E	L	N	E	P	A	A	Q	I	S	W	F	D	T	P	L	A	L	T	R	Y	E	F	L	L
Query Conservation
Alig confidence																																																		.	.
Template Conservation																																																		.	.
Template Sequence		A	L	S	D	V	E	Y	R	V	K	G	L	N	X	G	A	D	D	Y	L	P	K	P	F	D	L	R	E	L	I	A	R	V	R	A	L	I	R	R	K	S	E	S	K	S	T	K	L	.	.	V	C	G	D	L	I	L	D	T	A	T	K	K	A	Y	R	G	S	K	E	I	D	L	T	K	K	E	Y	Q	I
Template Known Secondary structure		S	S									T						S					S	S																				S		S	S			.	.			T	T					T	T	T	T					T	T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.			130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	T	L	L	K	S	P	G	R	V	W	S	R	Q	Q	L	M	D	S	V	W	E	D	A	Q	D	T	Y	D	R	T	V	D	T	H	I	K	T	L	R	A	K	L	R	A	I	N	P	D	L	S	P	I	N	T	H	R	G	M	G	Y	S	L	R
Query Conservation
Alig confidence																								.	.	.	.	.																							.
Template Conservation																								.	.	.	.	.																							.
Template Sequence		L	E	Y	L	V	X	N	K	N	R	V	V	T	K	E	E	L	Q	E	H	L	W	.	.	.	.	.	V	F	S	D	V	L	R	S	H	I	K	N	L	R	K	K	V	D	K	G	F	K	.	K	K	I	I	H	T	V	R	G	I	G	Y	V	A	R
Template Known Secondary structure								T	T	T	S													.	.	.	.	.																			T	T		S	.	S							T	T	T
Template Predicted Secondary structure																								.	.	.	.	.																							.
Template SS confidence
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.						.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.		.	.	.	.	.	.	210	.	.	.	.	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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