Job Description P08368 Confidence 97.39% Date Thu Jan 5 11:01:13 GMT 2012 Rank 137 Aligned Residues 53 % Identity 11% Template c1h0mD_ PDB info PDB header:transcription/dna Chain: D: PDB Molecule:transcriptional activator protein trar; PDBTitle: three-dimensional structure of the quorum sensing protein2 trar bound to its autoinducer and to its target dna Resolution 3.0 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		149	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence		F	D	T	P	L	A	L	T	R	Y	E	F	L	L	L	K	T	L	L	K	S	P	G	R	V	W	S	R	Q	Q	L	M	D	S	V	W	E	D	A	Q	D	T	Y	D	R	T	V	D	T	H	I	K	T	L	R	A	K	L	R	A	I	N
Query Conservation
Alig confidence																					.	.	.	.													.	.	.	.	.
Template Conservation																					.	.	.	.													.	.	.	.	.
Template Sequence		A	E	D	A	A	W	L	D	P	K	E	A	T	Y	L	R	W	I	A	.	.	.	.	V	G	K	T	X	E	E	I	A	D	V	E	.	.	.	.	.	G	V	K	Y	N	S	V	R	V	K	L	R	E	A	X	K	R	F	D	V	R	S
Template Known Secondary structure			B																	T	.	.	.	.	T	T										T	.	.	.	.	.	T																		T		S	S
Template Predicted Secondary structure																					.	.	.	.													.	.	.	.	.
Template SS confidence
		168	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.					.	.	.	190	.	.	.	.	.	.	.	.						.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions