Phyre 2 alignment of P75728 with d1jnra2

Job Description P75728
Confidence 99.18% Date Thu Jan 5 12:13:32 GMT 2012

Rank 88 Aligned Residues 310

% Identity 14% Template d1jnra2

SCOP info FAD/NAD(P)-binding domain FAD/NAD(P)-binding domain Succinate dehydrogenase/fumarate reductase flavoprotein N-terminal domain

Resolution 1.60

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	5	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.					.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure																							.	.	.	.
Query SS confidence																							.	.	.	.
Query Sequence	P	T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	.	.	.	.	H	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	S	Q	P	D	V	R	I	S	A	I	S	A	A	S	V	S	L	L	K	G	L	G	V	W	D	A	V	Q	A	M	R	C	H	P	Y
Query Conservation																							.	.	.	.
Alig confidence																							.	.	.	.																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence	E	T	D	I	L	I	I	G	G	G	F	S	G	C	G	A	A	Y	E	A	A	Y	W	A	K	L	G	G	L	K	V	T	L	V	E	K	A	A	V	E	R	S	G	A	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Q	G	L	S	A	I	N
Template Known Secondary structure			S							S															T	T	T	T								S	S		T	T	T		S	T	T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T						S
Template Predicted Secondary structure																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
	22	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.																												.	.	70	.	.	.	.

	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence	R	R	L	E	T	W	E	W	E	T	A	H	V	V	F	D	A	A	E	L	K	L	P	L	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	W	Q	A	L	E	A	H	P	K	V	T	L	R	V	P	G	S	L	I	A	L	H	R	H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R	A	K	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence	T	Y	I	D	L	T	G	R	S	E	R	Q	N	T	L	E	D	Y	V	R	Y	V	T	L	D	M	M	G	L	A	R	E	D	L	V	A	D	Y	A	R	H	V	D	G	T	V	H	L	F	E	K	W	G	L	P	I	W	K	T	P	D	G	K	Y	V	R	E	G	Q	W	Q	I	M	I	H	G	E	S	Y	K
Template Known Secondary structure					S	S	S	S	B	S																T	T	T																								T	T			B		B		T	T	S		B		B	S	S	S	S							T	T
Template Predicted Secondary structure
Template SS confidence
	75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.

	161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.							.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.
Predicted Secondary structure																																																										.	.	.	.	.	.
Query SS confidence																																																										.	.	.	.	.	.
Query Sequence	V	I	G	A	D	G	A	N	S	Q	V	R	Q	M	A	G	I	G	V	H	A	W	Q	Y	A	Q	S	C	M	L	I	S	V	Q	C	E	N	D	P	G	D	S	T	W	Q	Q	F	T	P	D	G	P	R	A	F	L	P	.	.	.	.	.	.	L	F	D	N	W	A	S	L	V	W	Y	D	S	P	A	R	I
Query Conservation																																																										.	.	.	.	.	.
Alig confidence					.	.	.	.	.																																																	.	.	.	.	.	.
Template Conservation					.	.	.	.	.
Template Sequence	P	I	I	A	.	.	.	.	.	E	A	A	K	M	A	V	G	E	E	N	I	Y	E	R	V	F	I	F	E	L	L	K	D	N	N	D	P	N	A	V	A	G	A	V	G	F	S	V	R	E	P	K	F	Y	V	F	K	A	K	A	V	I	L	A	T	G	G	A	T	L	L	F	R	P	R	S	T	G	E	A
Template Known Secondary structure					.	.	.	.	.									G	G	G				S										T	T		T	T	B									S	S	S	S								S									B		S	S	S			S			S	G	G
Template Predicted Secondary structure					.	.	.	.	.
Template SS confidence
	155	.	.	.						.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.

	235	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.												270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.		.	.	.	.	300	.	.
Predicted Secondary structure																																				.	.	.	.	.	.	.	.	.	.	.																											.
Query SS confidence																																				.	.	.	.	.	.	.	.	.	.	.																											.
Query Sequence	R	Q	L	Q	N	M	N	M	A	Q	L	Q	A	E	I	A	K	H	F	P	S	R	L	G	Y	V	T	P	L	A	A	G	A	F	P	.	.	.	.	.	.	.	.	.	.	.	L	T	R	R	H	A	L	Q	Y	V	Q	P	G	L	A	L	V	G	D	A	A	H	T	I	H	P	.	L	A	G	Q	G	V	N
Query Conservation																																				.	.	.	.	.	.	.	.	.	.	.																											.
Alig confidence																																				.	.	.	.	.	.	.	.	.	.	.																											.
Template Conservation
Template Sequence	A	G	R	T	W	Y	A	I	F	D	T	G	S	G	Y	Y	M	G	L	K	A	G	A	M	L	T	Q	A	G	F	W	V	C	G	P	E	D	L	M	P	E	E	Y	A	K	L	F	P	L	K	Y	N	R	M	T	T	V	K	G	L	F	A	I	G	D	C	A	G	A	N	P	H	K	F	S	S	G	S	F	T
Template Known Secondary structure	G	G			S	S		T	T		B	S										T														T	T	T							T	T		S	S			T	T	B		S	S	B	T					G	G	G	B		S
Template Predicted Secondary structure
Template SS confidence
	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.

	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence	L	G	Y	R	D	V	D	A	L	I	D	V	L	V	N	A	R	S	Y	G	E	A	W	A	S	Y	P	V	L	K	R	Y	Q	M	R	R	M	A	D	N	F	I	M	Q	S	G
Query Conservation
Alig confidence																						.	.
Template Conservation																						.	.
Template Sequence	E	G	R	I	A	A	K	A	A	V	R	F	I	L	E	Q	K	P	N	P	E	.	.	I	D	D	A	V	V	E	E	L	K	K	K	A	Y	A	P	M	E	R	F	M	Q	Y
Template Known Secondary structure																						.	.
Template Predicted Secondary structure																						.	.
Template SS confidence
	455	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.			.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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