Job Description P75728 Confidence 98.87% Date Thu Jan 5 12:13:32 GMT 2012 Rank 149 Aligned Residues 143 % Identity 15% Template c3nlcA_ PDB info PDB header:structural genomics, unknown function Chain: A: PDB Molecule:uncharacterized protein vp0956; PDBTitle: crystal structure of the vp0956 protein from vibrio parahaemolyticus.2 northeast structural genomics consortium target vpr147 Resolution 2.15 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.																																	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	N	Q	P	T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	H	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	Q	P	D
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		E	N	L	T	E	R	P	I	V	I	G	F	G	P	C	G	L	F	A	G	L	V	L	A	Q	X	G	F	N	P	I	I	V	E	R	G	K	E	V	R	E	R	T	K	D	T	F	G	F	W	R	K	R	T	L	N	P	E	S	N	V	Q	F	G	E	G	G	A	G	T	F	S	D	G	K	L	Y	S	Q	V
Template Known Secondary structure		T	T											S													T	T								S	S																					T	T	S	S	S	S	S	S	T	T	G	G	G	T	T	S								S
Template Predicted Secondary structure
Template SS confidence
		94	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.
		50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	R	I	S	A	I	S	A	A	S	V	S	L	L	K	G	L	G	V	W	D	A	V	Q	A	M	R	C	H	P	Y	R	R	L	E	T	W	E	W	E	T	A	H	V	V	F	D	A	A	E	L	K	L	P	L	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	W	Q	A	L	E	A	H	P	K	V	T
Query Conservation
Alig confidence																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	D	P	N	F	Y	G	R	K	V	I	T	E	F	V	E	A	G	A	P	E	E	I	L	Y	V	S	K	P	H	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	G	T	F	K	L	V	T	X	I	E	K	X	R	A	T	I	I	E	L	G	G	E	I
Template Known Secondary structure				T	T													T	T			G	G	G	G	T	B	S	S			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																				T	T
Template Predicted Secondary structure																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		174	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.																											.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.
		130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170
Predicted Secondary structure
Query SS confidence
Query Sequence		L	R	V	P	G	S	L	I	A	L	H	R	H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R	A	K	L	V	I	G	A	D	G	A	N	S	Q
Query Conservation
Alig confidence
Template Conservation
Template Sequence		R	F	S	T	R	V	D	D	L	H	X	E	D	G	Q	I	T	G	V	T	L	S	N	G	E	E	I	K	S	R	H	V	V	L	A	V	G	H	S	A	R
Template Known Secondary structure			S	S									S	S	S	B							T	T	S						S								T	T
Template Predicted Secondary structure
Template SS confidence
		228	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions