Job Description P75728 Confidence 99.50% Date Thu Jan 5 12:13:32 GMT 2012 Rank 48 Aligned Residues 304 % Identity 14% Template c3ka7A_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:oxidoreductase; PDBTitle: crystal structure of an oxidoreductase from methanosarcina2 mazei. northeast structural genomics consortium target id3 mar208 Resolution 1.80 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.												.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.
Predicted Secondary structure																																										.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																										.	.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	H	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	.	.	.	.	.	.	.	.	.	.	.	S	Q	P	D	V	R	I	S	A	I	S	A	A	S	V	S	L	L	K	G	L	G	V	W	D	A	V	Q	A
Query Conservation																																										.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		X	K	T	V	V	I	G	A	G	L	G	G	L	L	S	A	A	R	L	S	K	A	G	H	E	V	E	V	F	E	R	L	P	I	T	G	G	R	F	T	N	L	S	Y	K	G	F	Q	L	S	S	G	A	F	H	X	L	P	N	G	P	G	G	P	L	A	C	F	L	K	E	V	E	A	S	V	N	I	V	R
Template Known Secondary structure										B													T	T								S	S	S	S	S	B	T	T	S	S					T	T					S	S	S		S		B	T	T	G	G	G	S									T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		75	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		M	R	C	H	P	Y	R	R	L	E	T	W	E	W	E	T	A	H	V	V	F	D	A	A	E	L	K	L	P	L	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	E	X	T	T	V	R	V	P	L	K	K	G	N	P	D	Y	V	K	G	F	K	D	I	S	F	N	D	F	P	S	L	L	S	Y	K	D	R	X	K	I	A	L	L	I	V	S	T	R	K	N	R	P	S	G	S	S	L	Q	A	W	I	K	S	Q	V	S	D	E	W	L	I	K	F	A	D	S	F	C	G
Template Known Secondary structure											S	S	T	T			S	S	T	T							G	G	G	G	G	G	G	S															T	T	T	S				S	S	B
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
																																											119	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	A	L	E	A	H	P	K	V	T	L	R	V	P	G	S	L	I	A	L	H	R	H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R
Query Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		W	A	L	S	L	K	S	D	E	V	P	V	E	E	V	F	E	I	I	E	N	X	Y	R	F	G	G	T	G	I	P	E	G	G	C	K	G	I	I	D	A	L	E	T	V	I	S	A	N	G	G	K	I	H	T	G	Q	E	V	S	K	I	L	I	E	N	G	K	A	A	G	I	I	A	D	D	R	I	H	D
Template Known Secondary structure					S	S		G	G	G	S	B																S					T	T	S															T	T						S										T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.											.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query SS confidence																													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Query Sequence		A	K	L	V	I	G	A	D	G	A	N	S	Q	V	R	Q	M	A	G	I	G	V	H	A	W	Q	Y	.	.	.	.	.	.	.	.	.	.	A	Q	S	C	M	L	I	S	V	Q	C	E	N	D	P	G	D	S	T	W	Q	Q	F	T	P	D	G	P	R	A	F	L	P	L	F	.	.	.	.	.	.	.	.
Query Conservation																													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Alig confidence																													.	.	.	.	.	.	.	.	.	.																																				.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	D	L	V	I	S	N	L	G	H	A	A	T	A	V	L	C	S	E	A	L	S	K	E	A	D	A	A	Y	F	K	X	V	G	T	L	Q	P	S	A	G	I	K	I	C	L	A	A	D	E	P	L	V	G	H	T	G	V	L	L	T	P	Y	T	R	R	I	N	G	V	N	E	V	T	Q	A	D	P	E	L
Template Known Secondary structure			S						S									T	T	T	T			T	T	T	T													B										S	S		S	S		S	S	S						S	S	S	S							G	G	G	T		G	G	G
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
					220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.								.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																																	.	.	.	.	.	.	.
Query SS confidence		.	.	.																																																	.	.	.	.	.	.	.
Query Sequence		.	.	.	D	N	W	A	S	L	V	W	Y	D	S	P	A	R	I	R	Q	L	Q	N	M	N	M	A	Q	L	Q	A	E	I	A	K	H	F	P	S	R	L	G	Y	V	T	P	L	A	A	G	A	.	.	.	.	.	.	.	F	P	L	T	R	R	H	A	L	Q	Y	V	Q	P	G	L	A	L	V	G	D	A
Query Conservation		.	.	.																																																	.	.	.	.	.	.	.
Alig confidence		.	.	.																																																	.	.	.	.	.	.	.
Template Conservation
Template Sequence		A	P	P	G	K	H	L	T	X	C	H	Q	Y	V	A	P	E	N	V	K	N	L	E	S	E	I	E	X	G	L	E	D	L	K	E	I	F	P	G	K	R	Y	E	V	L	L	I	Q	S	Y	H	D	E	W	P	V	N	R	A	A	S	G	T	D	P	G	N	E	T	P	F	S	G	L	Y	V	V	G	D	G
Template Known Secondary structure		S		T	T												G	G	G	G	G	G																S	T	T												B	T	T	B		S	B	S	S		T	T					S	B		S	S	B	T					S	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	T	I	H	P	L	A	G	Q	G	V	N	L	G	Y	R	D	V	D
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	K	G	K	G	G	I	E	V	E	G	V	A	L	G	V	X	S	V	X
Template Known Secondary structure		S			T	T
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions