Return to main results Retrieve Phyre Job Id

Job DescriptionP75728
Confidence99.50%DateThu Jan 5 12:13:32 GMT 2012
Rank47Aligned Residues309
% Identity17%Templatec3i6dA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protoporphyrinogen oxidase; PDBTitle: crystal structure of ppo from bacillus subtilis with af
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20....... ..30.........40.........50 .........60.........70.
Predicted Secondary structure 



......
















.........




Query SS confidence 




















. . . . . .






















. . . . . . . . .




















Query Sequence  EIAIVGGGMVGGALALGLAQH. . . . . . GFAVTVIEHAEPAPFVADSQPDV. . . . . . . . . RISAISAASVSLLKGLGVWDA
Query Conservation 

 




 


  
  
   ......
  
 



              .........    
       
  


   
Alig confidence 




















......






















.........




















Template Conservation 














  
         
  
 


     


  
    
   
 
             
    
    
Template Sequence  HVVIIGGGITGLAAAFYMEKEIKEKNLPLELTLVEASPRVGGKIQTVKKDGYIIERGPDSFLERKKSAPQLVKDLGLEHL
Template Known Secondary structure 

STTTT
S
SSSSS
TT



TT

SS


TT
TTT

TT
Template Predicted Secondary structure 































Template SS confidence 















































































   7..10.........20.........30.........40.........50.........60.........70.........80......
 
   72.......80 .........90.........100.........110........
Predicted Secondary structure 





.....


















............................
Query SS confidence 








. . . . .





































. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  VQAMRCHPY. . . . . RRLETWEWETAHVVFDAAELKLPLLGYMVENTVLQQAL. . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation           .....                              
  
   
............................
Alig confidence 








.....





































............................
Template Conservation                                             
    
                               
Template Sequence  LVNNATGQSYVLVNRTLHPMPKSGKARAAMDFILPASKTKDDQSLGEFFRRRVGDEVVENLIEPLLSGIYAGDIDKLSLM
Template Known Secondary structure 





SS





SS


SSSS

BS
TTT
S
TTTBB
Template Predicted Secondary structure 

























Template SS confidence 















































































   87..90.........100.........110.........120.........130.........140.........150.........160......
 
   119120.........130.........140.........150.........160.........170.......
Predicted Secondary structure  ....................





































.
Query SS confidence  . . . . . . . . . . . . . . . . . . . .


























































.
Query Sequence  . . . . . . . . . . . . . . . . . . . . WQALEAHPKVTLRVPGSLIALHRHDDLQELELKGGEVIRAKLVIGADGANSQVRQMAGI.
Query Conservation  ....................                 
                             
  
  
  
  .
Alig confidence  ....................


























































.
Template Conservation                
       
              
  
                     

 
        

    
Template Sequence  STFPQFYQFQTLSTGLQTLVEEIEKQLKLTKVYKGTKVTKLSHSGSCYSLELDNGVTLDADSVIVTAPHKAAAGMLSELP
Template Known Secondary structure 
GGG

TT
TT

S
S


SSSSSS
S
S
TTTST
Template Predicted Secondary structure 

























Template SS confidence 















































































   188.190.........200.........210.........220.........230.........240.........250.........260.......
 
   178.180.........190.........200.........210....... ..220.........230.........240
Predicted Secondary structure  ......


















...........












Query SS confidence  . . . . . .







































. . . . . . . . . . .






















Query Sequence  . . . . . . GVHAWQYAQSCMLISVQCENDPGDSTWQQFTPDGPRAFLP. . . . . . . . . . . LFDNWASLVWYDSPARIRQLQNM
Query Conservation  ......                                 
      ...........                       
Alig confidence  ......







































...........






















Template Conservation                 
 
                                                              
Template Sequence  AISHLKNMHSTSVANVALGFPEGSVQMEHEGTGFVISRNSDFAITACTWTNKKWPHAAPEGKTLLRAYVGKAGDESIVDL
Template Known Secondary structure  TT
SSTT


SS
SS
STT

S
GGGS
TT


SS

GGGTS
Template Predicted Secondary structure 














































Template SS confidence 















































































   299300.........310.........320.........330.........340.........350.........360.........370........
 
   241........250.........260.........270.........280 .........290.........300...
Predicted Secondary structure 












.................
















Query SS confidence 







































. . . . . . . . . . . . . . . . .






















Query Sequence  NMAQLQAEIAKHFPSRLGYVTPLAAGAFPLTRRHALQYVQ. . . . . . . . . . . . . . . . . PGLALVGDAAHTIHPLAGQGVNL
Query Conservation                                          .................  
 






   
  
 
   
Alig confidence 







































.................










......





Template Conservation              
                 
                           

  

    ......
 
   
Template Sequence  SDNDIINIVLEDLKKVMNINGEPEMTCVTRWHESMPQYHVGHKQRIKELREALASAYPGVYMTGASFE. . . . . . GVGIPD
Template Known Secondary structure 
GGGS


S

S
BTTSTT
STTTS......

S
Template Predicted Secondary structure 


























......


Template SS confidence 















































































   379380.........390.........400.........410.........420.........430.........440...... ...450..
 
   304.....310.........320.
Predicted Secondary structure 
Query SS confidence 

















Query Sequence  GYRDVDALIDVLVNARSY
Query Conservation 
  

  

  
      
Alig confidence 

















Template Conservation 
  

  

  

  
  
Template Sequence  CIDQGKAAVSDALTYLFS
Template Known Secondary structure 

Template Predicted Secondary structure 
Template SS confidence 

















   453......460.........470
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions