Job Description P75728 Confidence 99.18% Date Thu Jan 5 12:13:32 GMT 2012 Rank 89 Aligned Residues 293 % Identity 13% Template c3h8lA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:nadh oxidase; PDBTitle: the first x-ray structure of a sulfide:quinone2 oxidoreductase: insights into sulfide oxidation mechanism Resolution 2.57 Å

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		6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.				.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.					.	.	.	.	.	.	60	.	.	.	.	.	.	.	.
Predicted Secondary structure																								.	.	.																											.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query SS confidence																								.	.	.																											.	.	.	.																.	.	.	.	.	.	.	.	.	.
Query Sequence		T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	H	.	.	.	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	S	Q	P	D	V	R	I	S	.	.	.	.	A	I	S	A	A	S	V	S	L	L	K	G	L	G	V	.	.	.	.	.	.	.	.	.	.
Query Conservation																								.	.	.																											.	.	.	.																.	.	.	.	.	.	.	.	.	.
Alig confidence																								.	.	.																											.	.	.	.																.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		T	K	V	L	V	L	G	G	R	F	G	A	L	T	A	A	Y	T	L	K	R	L	V	G	S	K	A	D	V	K	V	I	N	K	S	R	F	S	Y	F	R	P	A	L	P	H	V	A	I	G	V	R	D	V	D	E	L	K	V	D	L	S	E	A	L	P	E	K	G	I	Q	F	Q	E	G	T	V	E	K	I
Template Known Secondary structure									S	S															G	G	G	S							S	S	S							S	S					S	S															T	G	G	G	T
Template Predicted Secondary structure
Template SS confidence
		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
									69	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.
Predicted Secondary structure		.	.	.	.	.	.	.
Query SS confidence		.	.	.	.	.	.	.
Query Sequence		.	.	.	.	.	.	.	W	D	A	V	Q	A	M	R	C	H	P	Y	R	R	L	E	T	W	E	W	E	T	A	H	V	V	F	D	A	A	E	L	K	L	P	L	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	W	Q	A	L	E	A	H	P	K	V	T	L	R	V	P	G	S	L	I	A	L	H	R
Query Conservation		.	.	.	.	.	.	.
Alig confidence		.	.	.	.	.	.	.																																																															.	.	.	.	.	.
Template Conservation																																																																							.	.	.	.	.	.
Template Sequence		D	A	K	S	S	M	V	Y	Y	T	K	P	D	G	S	M	A	E	E	E	Y	D	Y	V	I	V	G	I	G	A	H	L	A	T	E	L	V	K	G	W	D	K	Y	G	Y	S	V	C	E	P	E	F	A	T	K	L	R	E	K	L	E	S	F	Q	G	G	N	I	A	.	.	.	.	.	.	I	G	S	G	P
Template Known Secondary structure			T	T	T	T							T	T	S								S												G	G	G	S	B	T								S	S	S	T	T														S					.	.	.	.	.	.
Template Predicted Secondary structure																																																																							.	.	.	.	.	.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150							.	.	.	.	.
		142	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.
Predicted Secondary structure																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R	A	K	L	V	I	G	A	D	G	A	N	S	Q	V	R	Q	M	A	G	I	G	V	H	A	W	Q	Y	A	Q	S	C	M	L	I	S	V	Q	C	E	N	D	P	G	D	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Conservation																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																																														.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Y	Q	G	H	N	P	K	P	K	V	P	E	N	F	V	P	N	A	D	S	A	C	E	G	P	V	F	E	M	S	L	M	L	H	G	Y	F	K	K	K	G	M	L	D	K	V	H	V	T	V	F	S	P	G	E	Y	L	S	D	L	S	P	N	S	R	K	A	V	A	S	I	Y	N	Q	L	G	I	K	L
Template Known Secondary structure		B					S	S			B	S		T	T	S	S				S		S	S																	T	T	T		T	T	T								S	S	S	S	S	T	T	S																T
Template Predicted Secondary structure
Template SS confidence
		156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.
					202	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.
Query SS confidence		.	.	.
Query Sequence		.	.	.	S	T	W	Q	Q	F	T	P	D	G	P	R	A	F	L	P	L	F	D	N	W	A	S	L	V	W	Y	D	S	P	A	R	I	R	Q	L	Q	N	M	N	M	A	Q	L	Q	A	E	I	A	K	H	F	P	S	R	L	G	Y	V	T	P	L	A	A	G	A	F	P	L	T	R	R	H	A	L	Q	Y
Query Conservation		.	.	.
Alig confidence		.	.	.																																												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		V	H	N	F	K	I	K	E	I	R	E	H	E	I	V	D	E	K	G	N	T	I	P	A	D	I	T	I	L	L	P	P	Y	T	G	N	P	A	L	K	N	S	T	P	D	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	V	D	D	G	G	F	I	P	T	D	L	N	M	V	S	I
Template Known Secondary structure				S								S	S					T	T	S						S																T	S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S		T	T	S		B		B	B	T	T	S	B	B	S
Template Predicted Secondary structure																																																.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		236	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.																			.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	Q	P	G	L	A	L	V	G	D	A	A	H	T	I	H	P	L	A	G	Q	G	V	N	L	G	Y	R	D	V	D	A	L	I	D	V	L	V	N	A	R	S	Y	G	E	A	W
Query Conservation
Alig confidence																							.	.	.
Template Conservation																							.	.	.
Template Sequence		K	Y	D	N	V	Y	A	V	G	D	A	N	S	M	T	V	P	K	L	G	Y	.	.	.	L	A	V	M	T	G	R	I	A	A	Q	H	L	A	N	R	L	G	V	P	T	K	V
Template Known Secondary structure		S		T	T					G	G	G	B	T	T			S					.	.	.																	T	T
Template Predicted Secondary structure																							.	.	.
Template SS confidence
		298	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.				.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.

No model constructed - rank, confidence too low

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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