Job Description P75728 Confidence 99.66% Date Thu Jan 5 12:13:32 GMT 2012 Rank 36 Aligned Residues 323 % Identity 12% Template c1y56B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:sarcosine oxidase; PDBTitle: crystal structure of l-proline dehydrogenase from p.horikoshii Resolution 2.86 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.						.	70	.	.	.	.	.
Predicted Secondary structure																																																																						.	.	.	.	.
Query SS confidence																																																																						.	.	.	.	.
Query Sequence		M	T	N	Q	P	T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	H	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	S	Q	P	D	V	R	I	S	A	I	S	A	A	S	V	S	L	L	K	G	L	G	V	.	.	.	.	.	W	D	A	V	Q	A	M
Query Conservation																																																																						.	.	.	.	.
Alig confidence						.																																																																.	.	.	.	.
Template Conservation						.
Template Sequence		L	P	E	K	.	S	E	I	V	V	I	G	G	G	I	V	G	V	T	I	A	H	E	L	A	K	R	G	E	E	V	T	V	I	E	K	R	F	I	G	S	G	S	T	F	R	C	G	T	G	I	R	Q	Q	F	N	D	E	A	N	V	R	V	M	K	R	S	V	E	L	W	K	K	Y	S	E	E	Y	G	F
Template Known Secondary structure				S	B	.		S							S													T	T								S	S	S	T	T		S														S	S																						T
Template Predicted Secondary structure						.
Template SS confidence
		2	.	.	.		.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		76	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.																																	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.
Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		R	C	H	P	Y	R	R	L	E	T	W	E	W	E	T	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	H	V	V	F	D	A	A	E	L	K	L	P	L	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	W	Q	A	L	E
Query Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		S	F	K	Q	T	G	Y	L	F	L	L	Y	D	D	E	E	V	K	T	F	K	R	N	I	E	I	Q	N	K	F	G	V	P	T	K	L	I	T	P	E	E	A	K	E	I	V	P	L	L	D	I	S	E	V	I	A	A	S	W	N	P	T	D	G	K	A	D	P	F	E	A	T	T	A	F	A	V	K	A	K
Template Known Secondary structure														S																	T	T														S	S	T	T				T	T								T	T
Template Predicted Secondary structure
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		124	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	H	P	K	V	T	L	R	V	P	G	S	L	I	A	L	H	R	H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R	A	K	L	V	I	G	A	D	G	A	N	S	Q	V	R	Q	M	A	G	I	G	V	H	A	W	Q	Y	A	Q	S	C	M	L	I	S	V	Q	C	E	N	D	P	G	D	S	T
Query Conservation
Alig confidence
Template Conservation
Template Sequence		E	Y	G	A	K	L	L	E	Y	T	E	V	K	G	F	L	I	E	N	N	E	I	K	G	V	K	T	N	K	G	I	I	K	T	G	I	V	V	N	A	T	N	A	W	A	N	L	I	N	A	M	A	G	I	K	T	K	I	P	I	E	P	Y	K	H	Q	A	V	I	T	Q	P	I	K	R	G	T	I	N	P
Template Known Secondary structure			T	T						S									S	S	S	B							T	T						S							G	G	G									T			S																		S	T	T	S	S		S
Template Predicted Secondary structure
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
		204	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.			.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.
Predicted Secondary structure																																.	.
Query SS confidence																																.	.
Query Sequence		W	Q	Q	F	T	P	D	G	P	R	A	F	L	P	L	F	D	N	W	A	S	L	V	W	Y	D	S	P	A	R	.	.	I	R	Q	L	Q	N	M	N	M	A	Q	L	Q	A	E	I	A	K	H	F	P	S	R	L	G	Y	V	T	P	L	A	A	G	A	F	P	L	T	R	R	H	A	L	Q	Y	V	Q	P
Query Conservation																																.	.
Alig confidence																																.	.																																				.	.	.	.	.	.	.
Template Conservation																																																																					.	.	.	.	.	.	.
Template Sequence		M	V	I	S	F	K	Y	G	H	A	Y	L	T	Q	T	F	H	G	G	I	I	G	G	I	G	Y	E	I	G	P	T	Y	D	L	T	P	T	Y	E	F	L	R	E	V	S	Y	Y	F	T	K	I	I	P	A	L	K	N	L	L	I	L	R	T	W	A	G	Y	.	.	.	.	.	.	.	Y	A	K	T	P	D
Template Known Secondary structure						S	T	T	T	T							S	S	S							S			B	S	S																							G	G	G	G	G	S										.	.	.	.	.	.	.					T	T
Template Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.								.	.	310	.	.	.
		282	.	.	.	.	.	.	.	290	.						.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.
Predicted Secondary structure												.	.	.	.	.
Query SS confidence												.	.	.	.	.
Query Sequence		G	L	A	L	V	G	D	A	A	H	.	.	.	.	.	T	I	H	P	L	A	G	Q	G	V	N	L	G	Y	R	D	V	D	A	L	I	D	V	L	V	N	A	R	S	Y	G	E	A	W	A	S	Y	P	V	L	K	R	Y	Q	M	R	R
Query Conservation												.	.	.	.	.
Alig confidence												.	.	.	.	.																																	.	.	.	.	.	.	.
Template Conservation																																																	.	.	.	.	.	.	.
Template Sequence		S	N	P	A	I	G	R	I	E	E	L	N	D	Y	Y	I	A	A	G	F	S	G	H	G	F	M	M	A	P	A	V	G	E	M	V	A	E	L	I	T	K	G	K	T	K	L	P	.	.	.	.	.	.	.	V	E	W	Y	D	P	Y	R
Template Known Secondary structure		S								S	S	S	B	T								T	T																				S	S		S	S		.	.	.	.	.	.	.	G	G	G	G		G	G	G
Template Predicted Secondary structure																																																	.	.	.	.	.	.	.
Template SS confidence
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360								.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions