Return to main results Retrieve Phyre Job Id

Job DescriptionP75728
Confidence99.33%DateThu Jan 5 12:13:32 GMT 2012
Rank74Aligned Residues306
% Identity19%Templatec1sezA_
PDB info PDB header:oxidoreductaseChain: A: PDB Molecule:protoporphyrinogen oxidase, mitochondrial; PDBTitle: crystal structure of protoporphyrinogen ix oxidase
Resolution2.90 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   7..10.........20.........30.........40...... ...50.........60.........70.......
Predicted Secondary structure 
















.........











Query SS confidence 







































. . . . . . . . .






























Query Sequence  EIAIVGGGMVGGALALGLAQHGFAVTVIEHAEPAPFVADS. . . . . . . . . QPDVRISAISAASVSLLKGLGVWDAVQAMRC
Query Conservation 

 




 


  
  
   
  
 



          .........        
       
  


         
Alig confidence 







































.........























...



Template Conservation   






 





  
   
  
 


     


  
    
   
 
                  
   ...    
Template Sequence  RVAVIGAGVSGLAAAYKLKIHGLNVTVFEAEGKAGGKLRSVSQDGLIWDEGANTXTESEGDVTFLIDSLGLRE. . . KQQF
Template Known Secondary structure 

STTS

SSSSS
SS

TTSS


B


STT
GG...G
Template Predicted Secondary structure 



























...
Template SS confidence 















































































   15....20.........30.........40.........50.........60.........70.........80....... ..90.
 
   78.80.........90.........100.........110........
Predicted Secondary structure 





















.......................................
Query SS confidence 








































. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Sequence  HPYRRLETWEWETAHVVFDAAELKLPLLGYMVENTVLQQAL. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Query Conservation                                   
  
   
.......................................
Alig confidence 








































.......................................
Template Conservation                                                                                  
Template Sequence  PLSQNKRYIARNGTPVLLPSNPIDLIKSNFLSTGSKLQXLLEPILWSHESVSGFFQRHFGKEVVDYLIDPFVAGTCGGDP
Template Known Secondary structure 
SS


SSSS

SSSSSS
T



B
TTS

G
Template Predicted Secondary structure 



















Template SS confidence 















































































   92.......100.........110.........120.........130.........140.........150.........160.........170.
 
   119120.........130.........140...
Predicted Secondary structure  .......................................................









Query SS confidence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
























Query Sequence  . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . WQALEAHPKVTLRVPGSLIALHRHD
Query Conservation  .......................................................                 
       
Alig confidence  .......................................................
























Template Conservation                                                  

                
     
  
    
Template Sequence  DSLSXHHSFPELWNLEKRFGSVILGAIRSKLSKTSANKKRQRGSFSFLGGXQTLTDAICKDLREDELRLNSRVLELSCSC
Template Known Secondary structure  GGSB
TS
TT



S

STT
S
BTT
TTTS
TTTTT


Template Predicted Secondary structure 





















Template SS confidence 















































































   182.......190.........200.........210.........220.........230.........240.........250.........260.
 
   144..... 150.........160.........170.........180...... ...190.........200.
Predicted Secondary structure 





...........





























...........






Query SS confidence 





. . . . . . . . . . .




































. . . . . . . . . . .














Query Sequence  DLQELE. . . . . . . . . . . LKGGEVIRAKLVIGADGANSQVRQMAGIGVHAWQYAQ. . . . . . . . . . . SCMLISVQCENDPGD
Query Conservation        ...........                
  
  
  
           ...........               
Alig confidence 





...........




































...........














Template Conservation                              

                                                  
Template Sequence  TEDSAIDSWSIISASPHKRQSEEESFDAVIXTAPLCDVKSXKIAKRGNPFLLNFIPEVDYVPLSVVITTFKRENVKYPLE
Template Known Secondary structure  SSSSSS
B
SSSS
B


S
S
TSSSSSB


TTS



GGGBSS


Template Predicted Secondary structure 







































Template SS confidence 















































































   272.......280.........290.........300.........310.........320.........330.........340.........350.
 
   202.......210. ...... ..220.........230.........240.........250.........260.......
Predicted Secondary structure 



..............





















Query SS confidence 









. . . . . . .





. . . . . . .

















































Query Sequence  STWQQFTPDG. . . . . . . PRAFLP. . . . . . . LFDNWASLVWYDSPARIRQLQNMNMAQLQAEIAKHFPSRLGYVTPLAAGA
Query Conservation           
.......      .......                                                  
Alig confidence 









.......





.......

















































Template Conservation                                                                   
              
Template Sequence  GFGVLVPSKEQQHGLKTLGTLFSSXXFPDRAPNNVYLYTTFVGGSRNRELAKASRTELKEIVTSDLKQLLGAEGEPTYVN
Template Known Secondary structure  SS

GGGGGGT

SS
GGGS
TTSTT
GGGTT


B
S

SS
Template Predicted Secondary structure 







































Template SS confidence 















































































   352.......360.........370.........380.........390.........400.........410.........420.........430.
 
   268.270.........280 .........290.........300.........310.........320.
Predicted Secondary structure 



................

















Query SS confidence 












. . . . . . . . . . . . . . . .








































Query Sequence  FPLTRRHALQYVQ. . . . . . . . . . . . . . . . PGLALVGDAAHTIHPLAGQGVNLGYRDVDALIDVLVNARSY
Query Conservation               ................  
 






   
  
 
   
  

  

  
      
Alig confidence 












................










......























Template Conservation                                

  

    ......
 

  
  

  

  

  
  
Template Sequence  HLYWSKAFPLYGHNYDSVLDAIDKXEKNLPGLFYAGNHRG. . . . . . GLSVGKALSSGCNAADLVISYLES
Template Known Secondary structure 


TTSTT

SSSS......
SSSS
Template Predicted Secondary structure 




















......


Template SS confidence 





































































   432.......440.........450.........460.........470. ........480.........490.....
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions