Phyre 2 alignment of P75728 with c1kifE

Job Description P75728
Confidence 98.96% Date Thu Jan 5 12:13:32 GMT 2012

Rank 118 Aligned Residues 297

% Identity 11% Template c1kifE_

PDB info PDB header:flavoprotein Chain: E: PDB Molecule:d-amino acid oxidase; PDBTitle: d-amino acid oxidase from pig kidney

Resolution 2.60 Å

	Insertion relative to template
	Deletion relative to template
	Catalytic residue from the CSA

Detailed help on interpreting your alignment

	6	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.															.	.	.	.	.	60	.	.	.	.	.	.		.	.	.	70
Predicted Secondary structure																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query SS confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Query Sequence	T	E	I	A	I	V	G	G	G	M	V	G	G	A	L	A	L	G	L	A	Q	H	G	F	A	V	T	V	I	E	H	A	E	P	A	P	F	V	A	D	S	Q	P	D	V	R	I	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	S	A	A	S	V	S	L	L	K	G	L	.	G	V	W	D
Query Conservation																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Alig confidence																																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.													.
Template Conservation
Template Sequence	M	R	V	V	V	I	G	A	G	V	I	G	L	S	T	A	L	C	I	H	E	R	Y	H	S	V	L	Q	P	L	D	V	K	V	Y	A	D	R	F	T	P	F	T	T	T	D	V	A	A	G	L	W	Q	P	Y	T	S	E	P	S	N	P	Q	E	A	N	W	N	Q	Q	T	F	N	Y	L	L	S	H	I	G
Template Known Secondary structure									S															T	T	T	S	S	S								S			T	T	S	S	S	G	G	G	S			B					S	S			S	S	T															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
	1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80

	71	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.																					.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130
Predicted Secondary structure																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence	A	V	Q	A	M	R	C	H	P	Y	R	R	L	E	T	W	E	W	E	T	A	H	V	V	F	D	A	A	E	L	K	L	P	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	G	Y	M	V	E	N	T	V	L	Q	Q	A	L	W	Q	A	L	E	A	H	P	K	V	T	L
Query Conservation																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																																			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence	S	P	N	A	A	N	M	G	L	T	P	V	S	G	Y	N	L	F	R	E	A	V	P	D	P	Y	W	K	D	M	V	L	G	F	R	K	L	T	P	R	E	L	D	M	F	P	D	Y	R	Y	G	W	F	N	T	S	L	I	L	E	G	R	K	Y	L	Q	W	L	T	E	R	L	T	E	R	G	V	K	F	F
Template Known Secondary structure	S	T	T	T	T	T	T	T											S	S						T	T	T	T	T	S												T	T	S	T	T																												T	T
Template Predicted Secondary structure
Template SS confidence
	81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160

	131	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210
Predicted Secondary structure
Query SS confidence
Query Sequence	R	V	P	G	S	L	I	A	L	H	R	H	D	D	L	Q	E	L	E	L	K	G	G	E	V	I	R	A	K	L	V	I	G	A	D	G	A	N	S	Q	V	R	Q	M	A	G	I	G	V	H	A	W	Q	Y	A	Q	S	C	M	L	I	S	V	Q	C	E	N	D	P	G	D	S	T	W	Q	Q	F	T	P	D
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template Sequence	L	.	.	.	.	.	.	.	.	.	.	.	.	.	R	K	V	E	S	F	E	E	V	A	R	G	G	A	D	V	I	I	N	C	T	G	V	W	A	.	.	.	G	V	L	Q	P	D	P	L	L	Q	P	G	R	G	Q	I	I	K	V	D	A	P	W	L	K	N	F	I	I	T	H	D	L	E	R	G	I	Y
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.												T	T		S							G	G	G		.	.	.				S			T	T														T	T			S							T	T	T		T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.																										.	.	.
Template SS confidence
	161														.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.				.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.

	211	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.		.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																	.
Query SS confidence																																																	.
Query Sequence	G	P	R	A	F	L	P	L	F	D	N	W	A	S	L	V	W	Y	D	S	P	A	R	I	R	Q	L	Q	N	M	N	M	A	Q	L	Q	A	E	I	A	K	H	F	P	S	R	L	G	.	Y	V	T	P	L	A	A	G	A	F	P	L	T	R	R	H	A	L	Q	Y	V	Q	P	G	L	A	L	V	G	D	A
Query Conservation																																																	.
Alig confidence																																																	.																	.	.
Template Conservation																																																																		.	.
Template Sequence	N	S	P	Y	I	I	P	G	L	Q	A	V	T	L	G	G	T	F	Q	V	G	N	W	N	E	I	N	N	I	Q	D	H	N	T	I	W	E	G	C	C	R	L	E	P	T	L	K	D	A	K	I	V	G	E	Y	T	G	F	R	P	V	R	P	Q	V	.	.	R	L	E	R	E	Q	L	R	F	G	S	S	N
Template Known Secondary structure		S							S	S	S										T					S																	S	G	G	G	G	G															S	S		.	.									S	S	S
Template Predicted Secondary structure																																																																		.	.
Template SS confidence
	225	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.			290	.	.	.	.	.	.	.	.	.	300	.	.

	290	.	.	.	.	.	.	.			.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure									.	.
Query SS confidence									.	.
Query Sequence	A	H	T	I	H	P	L	A	.	.	G	Q	G	V	N	L	G	Y	R	D	V	D	A	L	I	D	V	L	V	N	A	R	S
Query Conservation									.	.
Alig confidence									.	.
Template Conservation
Template Sequence	T	E	V	I	H	N	Y	G	H	G	G	Y	G	L	T	I	H	W	G	C	A	L	E	V	A	K	L	F	G	K	V	L	E
Template Known Secondary structure										G	G	G
Template Predicted Secondary structure
Template SS confidence
	303	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

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No model constructed - rank, confidence too low

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server

Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]

© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys
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