Job Description P23200 Confidence 5.50% Date Thu Jan 5 11:39:18 GMT 2012 Rank 24 Aligned Residues 161 % Identity 9% Template c2b2hA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:ammonium transporter; PDBTitle: ammonium transporter amt-1 from a. fulgidus (as) Resolution 1.54 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		39	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.		.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.
Predicted Secondary structure																											.
Query SS confidence																											.
Query Sequence		L	L	N	L	S	N	I	L	T	Q	S	S	V	R	I	I	I	A	L	G	V	A	G	L	I	.	V	T	Q	G	T	D	L	S	A	G	R	Q	V	G	L	A	A	V	V	A	A	T	L	L	Q	S	M	D	N	A	N	K	V	F	P	E	M	A	T	M	P	I	A	L	V	I	L	I	V	C	A	I	G	A
Query Conservation																											.
Alig confidence																											.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		I	N	A	V	V	V	T	N	T	S	A	A	V	A	G	F	V	W	M	V	I	G	W	I	K	G	K	P	G	S	L	G	I	V	S	G	A	I	A	G	L	A	A	I	T	P	A	A	G	F	V	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	V	K	G	A	I	V	I	G	L	V	A	G
Template Known Secondary structure																											S																			T	T	T	T	T	T		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																					.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		217	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.																	.	.	270	.	.	.	.	.	.	.	.	.	280
		118	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	I	G	L	I	N	G	L	I	I	A	Y	L	N	V	T	P	F	I	T	T	L	G	T	M	I	I	V	Y	G	I	N	S	L	Y	Y	D	F	V	G	A	S	P	I	S	G	F	D	S	G	F	S	T	F	A	Q	G	F	V	A	L	G	S	F	R	L	S	Y	I	T	F	Y	A	L	I	A	V	A	F	V
Query Conservation
Alig confidence																																																									.
Template Conservation																																																									.
Template Sequence		I	V	C	Y	L	A	M	D	F	R	I	K	K	K	I	D	E	S	L	D	A	W	A	I	H	G	I	G	G	L	W	G	S	V	A	V	G	I	L	A	N	P	E	V	N	G	Y	A	G	L	L	F	G	N	P	.	Q	L	L	V	S	Q	L	I	A	V	A	S	T	T	A	Y	A	F	L	V	T	L	I	L
Template Known Secondary structure														T	T				T	T																											S				G	G	G	T			.
Template Predicted Secondary structure																																																									.
Template SS confidence
		281	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.		.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.
		198	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		W	V	L	W	N	K	T	R	F	G	K	N	I	F	A	I	G	G	N	P	E	A
Query Conservation
Alig confidence										.	.	.
Template Conservation										.	.	.
Template Sequence		A	K	A	V	D	A	A	V	.	.	.	G	L	R	V	S	S	Q	E	E	Y	V
Template Known Secondary structure									T	.	.	.		S	B
Template Predicted Secondary structure										.	.	.
Template SS confidence
		360	.	.	.	.	.	.	.				.	.	370	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions