Job Description P0A9W3 Confidence 99.18% Date Thu Jan 5 11:11:33 GMT 2012 Rank 77 Aligned Residues 312 % Identity 15% Template c3cmvG_ PDB info PDB header:recombination Chain: G: PDB Molecule:protein reca; PDBTitle: mechanism of homologous recombination from the reca-2 ssdna/dsdna structures Resolution 4.30 Å

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		26	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.
Predicted Secondary structure																															.
Query SS confidence																															.
Query Sequence		S	L	S	F	F	P	G	A	K	I	G	V	L	G	L	N	G	A	G	K	S	T	L	L	R	I	M	A	G	.	I	D	K	D	I	E	G	E	A	R	P	Q	P	D	I	K	I	G	Y	L	P	Q	E	P	Q	L	N	P	E	H	T	V	R	E	S	I	E	E	A	V	S	E	V	V	N	A	L	K	R	L
Query Conservation																															.
Alig confidence																															.
Template Conservation
Template Sequence		A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F	I	D	A	E	H	A	L	D	P	I	Y	A	R	K	L	G	V	D	I	D	N	L	L	C	S	Q	P	D	T	G	E	Q	A	L	E	I	C	D	A	L
Template Known Secondary structure		S	S	S			T	T	S							S	T	T	S	S														T	T	T								S	S												T			G	G	G							S
Template Predicted Secondary structure
Template SS confidence
		1053	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.	.	1110	.	.	.	.	.	.	.	.	.	1120	.	.	.	.	.	.	.	.	.	1130	.	.
		105	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.																					.	.	150	.	.	.	.	.			.	.	.	.	160	.	.
Predicted Secondary structure																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query SS confidence																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Query Sequence		D	E	V	Y	A	L	Y	A	D	P	D	A	D	F	D	K	L	A	A	E	Q	G	R	L	E	E	I	I	Q	A	H	D	G	H	N	L	N	V	Q	L	E	R	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	A	D	A	L	R	L	P	D	.	.	W	D	A	K	I	A	N
Query Conservation																																													.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Alig confidence																							.	.	.	.	.																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Conservation																							.	.	.	.	.
Template Sequence		A	R	S	G	A	V	D	V	I	V	V	D	S	V	A	A	L	T	P	K	A	.	.	.	.	.	E	I	E	G	L	A	A	R	M	M	S	Q	A	M	R	K	L	A	G	N	L	K	Q	S	N	T	L	L	I	F	I	N	Q	G	G	N	A	L	K	F	Y	A	S	V	R	L	D	I	R	R	I	G	A	V
Template Known Secondary structure			T	T	S	S									G	G	G						.	.	.	.	.						T	T																T	T	T											T	T						S
Template Predicted Secondary structure																							.	.	.	.	.
Template SS confidence
		1133	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.						.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.	.	.	1180	.	.	.	.	.	.	.	.	.	1190	.	.	.	.	.	.	.	.	.	1200	.	.	.	.	.	.	.
		163	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180			.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure																				.	.
Query SS confidence																				.	.
Query Sequence		L	S	G	G	E	R	R	R	V	A	L	C	R	L	L	L	E	K	.	.	P	D	M	L	L	L	D	E	P	T	N	H	L	D	A	E	S	V	A	W	L	E	R	F	L	H	D	F	E	G	T	V	V	A	I	T	H	D	R	Y	F	L	D	N	V	A	G	W	I	L	E	L	D	R	G	E	G	I	P	W
Query Conservation																				.	.
Alig confidence																				.	.												.														.																			.													.	.	.
Template Conservation																																	.														.																			.													.	.	.
Template Sequence		K	E	G	E	N	V	V	G	S	E	T	R	V	K	V	V	K	N	K	I	A	A	P	F	K	Q	A	E	F	Q	I	.	L	Y	G	E	G	I	N	F	Y	G	E	L	V	.	D	L	G	V	K	E	K	L	I	E	K	A	G	A	W	Y	S	Y	.	K	G	E	K	I	G	Q	G	K	A	N	A	.	.	.
Template Known Secondary structure				T	T															S	S	S		T	T								.		T	T	T										.						T	T	S	S				T	T					.	T	T											.	.	.
Template Predicted Secondary structure																																	.														.																			.													.	.	.
Template SS confidence
		1232	.	.	.	.	.	.	.	1240	.	.	.	.	.	.	.	.	.	1250	.	.	.	.	.	.	.	.	.	1260	.	.		.	.	.	.	.	.	.	1270	.	.	.	.	.		.	.	.	.	1280	.	.	.	.	.	.	.	.	.	1290	.	.	.		.	.	.	.	.	.	1300	.	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
Predicted Secondary structure
Query SS confidence
Query Sequence		E	G	N	Y	S	S	W	L	E	Q	K	D	Q	R	L	A	Q	E	A	S	Q	E	A	A	R	R	K	S	I	E	K	E	L	E	W	V	R	Q	G	T	K	G	R	Q	S	K	G	K	A	R	L	A	R	F	E	E	L	N	S	T	E	Y	Q	K	R	N	E	T	N	E	L	F	I	P	P	G	P	R	L	G
Query Conservation
Alig confidence		.	.	.	.																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	T	A	W	L	K	D	N	P	E	T	A	K	E	I	E	K	K	V	R	E	L	L	L	K	Q	K	A	L	A	A	A	L	G	Q	I	E	K	Q	F	G	K	G	S	I	M	R	L	G	E	D	R	S	M	D	V	E	T	I	S	T	G	S	L	S	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		.	.	.	.					T	T	S																																S	S	T	T					T	T													S				.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure		.	.	.	.																																																																	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
						1306	.	.	.	1310	.	.	.	.	.	.	.	.	.	1320	.	.	.	.	.	.	.	.	.	1330	.	.	.	.	.	.	.	.	.	1340	.	.	.	.	.	.	.	.	.	1350	.	.	.	.	.	.	.	.	.	1360	.	.	.	.	.	.	.	.	.
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.			.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																								.	.
Query SS confidence																								.	.
Query Sequence		D	K	V	L	E	V	S	N	L	R	K	S	Y	G	D	R	L	L	I	D	D	L	.	.	S	F	S	I	P	K	G	A	I	V	G	I	I	G	P	N	G	A	G	K	S	T	L	F	R	M	I	S	G	Q	E	Q	P	D	S	G	T	I	T	L
Query Conservation																								.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	D	I	A	L	G	A	G	G	L	P	M	G	R	I	V	E	I	Y	G	P	E	S	S	G	K	T	T	L	T	L	Q	V	I	A	A	A	Q	R	E	G	K	T	C	A	F
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.						S	S	S	S			T	T	S							S	T	T	S	S														T	S	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
																				2047	.	.	2050	.	.	.	.	.	.	.	.	.	2060	.	.	.	.	.	.	.	.	.	2070	.	.	.	.	.	.	.	.	.	2080	.	.	.	.	.	.	.	.	.	2090	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions