Job Description P0A9W3 Confidence 100.00% Date Thu Jan 5 11:11:33 GMT 2012 Rank 4 Aligned Residues 479 % Identity 22% Template c3bk7A_ PDB info PDB header:hydrolyase/translation Chain: A: PDB Molecule:abc transporter atp-binding protein; PDBTitle: structure of the complete abce1/rnaase-l inhibitor protein2 from pyrococcus abysii Resolution 2.80 Å

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		6	.	.	.	10	.									.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure								.	.	.	.	.	.	.	.
Query SS confidence								.	.	.	.	.	.	.	.
Query Sequence		Y	T	M	H	R	V	.	.	.	.	.	.	.	.	G	K	V	V	P	P	K	R	H	I	L	K	N	I	S	L	S	F	F	P	G	A	K	I	G	V	L	G	L	N	G	A	G	K	S	T	L	L	R	I	M	A	G	I	D	K	D	I	E	G	E	A	R	P	Q	P	D	I	K	I	G	Y	L	P	Q	E
Query Conservation								.	.	.	.	.	.	.	.
Alig confidence								.	.	.	.	.	.	.	.																	.																																								.	.	.	.	.	.	.	.	.	.
Template Conservation																																.																																								.	.	.	.	.	.	.	.	.	.
Template Sequence		I	S	I	V	N	L	P	E	Q	L	D	E	D	C	V	H	R	Y	G	V	N	A	F	V	L	Y	R	L	P	I	.	V	K	D	G	M	V	V	G	I	V	G	P	N	G	T	G	K	T	T	A	V	K	I	L	A	G	Q	L	I	P	N	L	C	E	D	N	D	S	W	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure									T	T	G	G	G	S						S	T	T										.			T	T	S								T	T	S	S									T	T	S	S				T	T	T	T					.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																.																																								.	.	.	.	.	.	.	.	.	.
Template SS confidence
		70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.		.
Predicted Secondary structure																																																																																.
Query SS confidence																																																																																.
Query Sequence		P	Q	L	N	P	E	H	T	V	R	E	S	I	E	E	A	V	S	E	V	V	N	A	L	K	R	L	D	E	V	Y	A	L	Y	A	D	P	D	A	D	F	D	K	L	A	A	E	Q	G	R	L	E	E	I	I	Q	A	H	D	G	H	N	L	N	V	Q	L	E	R	A	A	D	A	L	R	L	P	D	.	W
Query Conservation																																																																																.
Alig confidence		.	.	.	.	.	.	.	.	.	.																																																																					.
Template Conservation		.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	D	N	V	I	R	A	F	R	G	N	E	L	Q	N	Y	F	E	R	L	K	N	G	E	I	R	P	V	V	K	P	Q	Y	V	D	L	L	P	K	A	V	K	G	K	V	R	E	L	L	K	K	V	D	E	V	G	K	F	E	E	V	V	K	E	L	E	L	E	N	V	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.							T	T	T	S	T											T	S								S		G	G	G	G	G	G	T			S	B								T			S	S									T	T		T	T	G	G
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.
Template SS confidence
												139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.
		157	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.				.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure																																																						.	.	.
Query SS confidence																																																						.	.	.
Query Sequence		D	A	K	I	A	N	L	S	G	G	E	R	R	R	V	A	L	C	R	L	L	L	E	K	P	D	M	L	L	L	D	E	P	T	N	H	L	D	A	E	S	V	A	W	L	E	R	F	L	H	D	F	.	.	.	E	G	T	V	V	A	I	T	H	D	R	Y	F	L	D	N	V	A	G	W	I	L	E	L	D
Query Conservation																																																						.	.	.
Alig confidence																																																						.	.	.
Template Conservation
Template Sequence		D	R	E	L	H	Q	L	S	G	G	E	L	Q	R	V	A	I	A	A	A	L	L	R	K	A	H	F	Y	F	F	D	E	P	S	S	Y	L	D	I	R	Q	R	L	K	V	A	R	V	I	R	R	L	A	N	E	G	K	A	V	L	V	V	E	H	D	L	A	V	L	D	Y	L	S	D	V	I	H	V	V	Y
Template Known Secondary structure		G	S	B	G	G	G																	S			S							T	T	T	T																			T	T								S										S
Template Predicted Secondary structure
Template SS confidence
		209	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	G	E	G	I	P	W	E	G	N	Y	S	S	W	L	E	Q	K	D	Q	R	L	A	Q	E	A	S	Q	E	A	A	R	R	K	S	I	E	K	E	L	E	W	V	R	Q	G	T	K	G	R	Q	S	K	G	K	A	R	L	A	R	F	E	E	L	N	S	T	E	Y	Q	K	R	N	E	T	N	E	L	F	I
Query Conservation
Alig confidence									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	E	P	G	V	Y	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	I	F	S	K	P	K	G	T	R	N	G	I	N	E	F	L	Q	G	Y	L	K	D	E	N	V	R	F	R	P	Y	E	I	R	F	T	K	L	S
Template Known Secondary structure		S		T	T	T			.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		T			T	T	T	T					S	S							S	T
Template Predicted Secondary structure									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		289	290	.	.	.	.	.																																				.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		P	P	G	P	R	L	G	D	K	V	L	E	V	S	N	L	R	K	S	Y	G	D	R	L	L	I	D	D	L	S	F	S	I	P	K	G	A	I	V	G	I	I	G	P	N	G	A	G	K	S	T	L	F	R	M	I	S	G	Q	E	Q	P	D	S	G	T	I	T	L	G	E	T	V	K	L	A	S	V	D	Q
Query Conservation
Alig confidence																										.																																													.	.
Template Conservation																										.																																													.	.
Template Sequence		E	R	V	D	V	E	R	E	T	L	V	E	Y	P	R	L	V	K	D	Y	G	S	F	K	.	L	E	V	E	P	G	E	I	R	K	G	E	V	I	G	I	V	G	P	N	G	I	G	K	T	T	F	V	K	M	L	A	G	V	E	E	P	T	E	G	K	V	E	W	.	.	D	L	T	V	A	Y	K	P	Q
Template Known Secondary structure		T	S																			S	S			.										T	T									T	T	S	S										T	S	S			S	B	S					.	.									S
Template Predicted Secondary structure																										.																																													.	.
Template SS confidence
		334	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.		.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.			.	.	.	.	.	.	.	.	410
		394	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	R	D	S	M	D	N	S	K	T	V	W	E	E	V	S	G	G	L	D	I	M	K	I	G	N	T	E	M	P	S	R	A	Y	V	G	R	F	N	F	K	G	V	D	Q	G	K	R	V	G	E	L	S	G	G	E	R	G	R	L	H	L	A	K	L	L	Q	V	G	G	N	M	L	L	L	D	E	P	T	N
Query Conservation
Alig confidence				.																				.	.																		.
Template Conservation				.																				.	.																		.
Template Sequence		Y	I	.	K	A	E	Y	E	G	T	V	Y	E	L	L	S	K	I	D	S	S	K	.	.	L	N	S	N	F	Y	K	T	E	L	L	K	P	L	G	I	I	.	D	L	Y	D	R	N	V	E	D	L	S	G	G	E	L	Q	R	V	A	I	A	A	T	L	L	R	D	A	D	I	Y	L	L	D	E	P	S	A
Template Known Secondary structure		S		.					S	S	B													.	.										T					T		T	.	T	T	T	T	S	B	G	G	G																T	S			S							T	T	T
Template Predicted Secondary structure				.																				.	.																		.
Template SS confidence
		411	.		.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.			.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.		.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.
		474	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490					.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.
Predicted Secondary structure																			.	.	.	.
Query SS confidence																			.	.	.	.
Query Sequence		D	L	D	I	E	T	L	R	A	L	E	N	A	L	L	E	F	.	.	.	.	P	G	C	A	M	V	I	S	H	D	R	W	F	L	D	R	I	A	T	H	I	L	D	Y	Q	D	E	G	K	V	E	F	F	E	G	N	F	T	E	Y	E	E	Y	K	K	R	T	L	G	A	D	A	L	E	P	K	R
Query Conservation																			.	.	.	.
Alig confidence																			.	.	.	.
Template Conservation
Template Sequence		Y	L	D	V	E	Q	R	L	A	V	S	R	A	I	R	H	L	M	E	K	N	E	K	T	A	L	V	V	E	H	D	V	L	M	I	D	Y	V	S	D	R	L	I	V	F	E	G	E	P	G	R	H	G	R	A	L	P	P	M	G	M	R	E	G	M	N	R	F	L	A	S	V	G	I	T	F	R	R
Template Known Secondary structure		T																				T	T								S										S									T	T	T																			T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		487	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.	.	.	.	.	.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.