Job Description P0A9W3 Confidence 100.00% Date Thu Jan 5 11:11:33 GMT 2012 Rank 50 Aligned Residues 220 % Identity 27% Template c3b5xB_ PDB info PDB header:membrane protein Chain: B: PDB Molecule:lipid a export atp-binding/permease protein msba; PDBTitle: crystal structure of msba from vibrio cholerae Resolution 5.50 Å

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		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.			.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.
Predicted Secondary structure																															.	.
Query SS confidence																															.	.
Query Sequence		R	N	E	T	N	E	L	F	I	P	P	G	P	R	L	G	D	K	V	L	E	V	S	N	L	R	K	S	Y	.	.	G	D	R	L	L	I	D	D	L	S	F	S	I	P	K	G	A	I	V	G	I	I	G	P	N	G	A	G	K	S	T	L	F	R	M	I	S	G	Q	E	Q	P	D	S	G	T	I	T	L
Query Conservation																															.	.
Alig confidence																															.	.
Template Conservation
Template Sequence		D	L	E	T	E	R	D	N	G	K	Y	E	A	E	R	V	N	G	E	V	D	V	K	D	V	T	F	T	Y	Q	G	K	E	K	P	A	L	S	H	V	S	F	S	I	P	Q	G	K	T	V	A	L	V	G	R	S	G	S	G	K	S	T	I	A	N	L	F	T	R	F	Y	D	V	D	S	G	S	I	C	L
Template Known Secondary structure				S							S	S			S							B			S					S	S	T	T	S			S	S		S							S	S									T	T	T	T							T	T	S			S	S					S
Template Predicted Secondary structure
Template SS confidence
		323	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.
		383	.	.												.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Query Sequence		G	E	T	.	.	.	.	.	.	.	.	.	.	.	V	K	L	A	S	V	D	Q	F	R	D	S	M	D	N	S	K	T	V	W	E	E	V	S	G	G	L	D	I	M	K	I	G	N	T	E	M	P	S	R	A	Y	V	G	R	F	N	F	K	G	V	D	Q	G	K	R	V	G	E	.	.	.	.	.	.	.
Query Conservation					.	.	.	.	.	.	.	.	.	.	.																																																												.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.	.	.	.	.											.	.																		.	.	.																												.	.	.	.	.	.	.
Template Conservation																										.	.																		.	.	.
Template Sequence		D	G	H	D	V	R	D	Y	K	L	T	N	L	R	R	H	F	A	L	V	S	Q	N	V	.	.	H	L	F	N	D	T	I	A	N	N	I	A	Y	A	A	E	G	.	.	.	E	Y	T	R	E	Q	I	E	Q	A	A	R	Q	A	H	A	M	E	F	I	E	N	M	P	Q	G	L	D	T	V	I	G	E	N
Template Known Secondary structure		T	T			S	T	T	S		S	S	S	S	S	T	T						S	S		.	.				T	T								T	T	S	S	S	.	.	.	S			S		S	T	T						T	S	T	T	T	T	T	T	S	S	S	S		S	S					S	S
Template Predicted Secondary structure																										.	.																		.	.	.
Template SS confidence
		403	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.			.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.				.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.
					445	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490			.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.
Predicted Secondary structure		.	.	.																																															.	.
Query SS confidence		.	.	.																																															.	.
Query Sequence		.	.	.	L	S	G	G	E	R	G	R	L	H	L	A	K	L	L	Q	V	G	G	N	M	L	L	L	D	E	P	T	N	D	L	D	I	E	T	L	R	A	L	E	N	A	L	L	E	F	.	.	P	G	C	A	M	V	I	S	H	D	R	W	F	L	D	R	I	A	T	H	I	L	D	Y	Q	D	E	G	K
Query Conservation		.	.	.																																															.	.
Alig confidence		.	.	.																																															.	.															.
Template Conservation																																																																			.
Template Sequence		G	T	S	L	S	G	G	Q	R	Q	R	V	A	I	A	R	A	L	L	R	D	A	P	V	L	I	L	D	E	A	T	S	A	L	D	T	E	S	E	R	A	I	Q	A	A	L	D	E	L	Q	K	N	K	T	V	L	V	I	A	H	R	L	S	T	I	.	E	Q	A	D	E	I	L	V	V	D	E	G	E	I
Template Known Secondary structure			S	S	S		T	T												T				S	S						S		S	S			T	T	T										T	T	T	T	T	S							S		G	G	G	G	.	G	T		S							S	S
Template Predicted Secondary structure																																																																			.
Template SS confidence
		478	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.	.	510	.	.	.	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.	.	.	.	540	.	.		.	.	.	.	.	.	.	550	.	.	.	.	.	.
		520	.	.	.	.	.	.	.	.	.	530	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	F	F	E	G	N	F	T	E	Y	E	E
Query Conservation
Alig confidence					.	.
Template Conservation					.	.
Template Sequence		I	E	R	.	.	G	R	H	A	D	L	L	A
Template Known Secondary structure					.	.	S							S
Template Predicted Secondary structure					.	.
Template SS confidence
		557	.	.			560	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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