Job Description P0A9W3 Confidence 97.11% Date Thu Jan 5 11:11:33 GMT 2012 Rank 140 Aligned Residues 129 % Identity 16% Template c2j289_ PDB info PDB header:ribosome Chain: 9: PDB Molecule:signal recognition particle 54; PDBTitle: model of e. coli srp bound to 70s rncs Resolution 8.0 Å

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		340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	D	L	S	F	S	I	P	K	G	A	I	V	G	I	I	G	P	N	G	A	G	K	S	T	L	F	R	M	I	S	G	Q	E	Q	P	D	S	G	T	I	T	L	G	E	T	V	K	L	A	S	V	D	Q	F	R	D	S	M	D	N	S	K	T	V	W	E	E	V	S	G	G	L	D	I	M	K	I	G	N
Query Conservation
Alig confidence																																										.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																										.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		Q	T	L	N	L	A	A	Q	P	P	A	V	V	L	M	A	G	L	Q	G	A	G	K	T	T	S	V	G	K	L	G	K	F	L	R	E	K	H	K	K	.	.	.	.	.	K	V	L	V	V	S	A	D	V	Y	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A
Template Known Secondary structure						S		S	S	S	S								S	S	S	S	S	S	T	T	T										T	S	S	S		.	.	.	.	.				B						S	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S
Template Predicted Secondary structure																																										.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		91	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130						.	.	.	.	.	.	.	.	.	140	.																							.	.
		420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.
Predicted Secondary structure																																																							.																					.	.
Query SS confidence																																																							.																					.	.
Query Sequence		T	E	M	P	S	R	A	Y	V	G	R	F	N	F	K	G	V	D	Q	G	K	R	V	G	E	L	S	G	G	E	R	G	R	L	H	L	A	K	L	L	Q	V	G	G	N	M	L	L	L	D	E	P	T	.	N	D	L	D	I	E	T	L	R	A	L	E	N	A	L	L	E	F	P	G	.	.	C	A	M	V
Query Conservation																																																							.																					.	.
Alig confidence																	.	.	.																																				.																					.	.
Template Conservation																	.	.	.
Template Sequence		A	I	K	Q	L	E	T	L	A	E	Q	V	G	V	D	.	.	.	F	F	P	S	D	V	G	Q	K	P	V	D	I	V	N	A	A	L	K	E	A	K	L	K	F	Y	D	V	L	L	V	D	T	A	G	R	L	H	V	D	E	A	M	M	D	E	I	K	Q	V	H	A	S	I	N	P	V	E	T	L	F	V
Template Known Secondary structure		S											T	T			.	.	.					S	S				T	T													T	T		S											S	S																		S
Template Predicted Secondary structure																	.	.	.
Template SS confidence
		144	.	.	.	.	.	150	.	.	.	.	.	.	.	.				.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220
		497	.
Predicted Secondary structure
Query SS confidence
Query Sequence		I	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		V	D
Template Known Secondary structure
Template Predicted Secondary structure
Template SS confidence
		221	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions