Job Description P0A9W3 Confidence 97.18% Date Thu Jan 5 11:11:33 GMT 2012 Rank 133 Aligned Residues 117 % Identity 15% Template c2iy3A_ PDB info PDB header:rna-binding Chain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome Resolution 16.00 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		351	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure
Query SS confidence
Query Sequence		I	V	G	I	I	G	P	N	G	A	G	K	S	T	L	F	R	M	I	S	G	Q	E	Q	P	D	S	G	T	I	T	L	G	E	T	V	K	L	A	S	V	D	Q	F	R	D	S	M	D	N	S	K	T	V	W	E	E	V	S	G	G	L	D	I	M	K	I	G	N	T	E	M	P	S	R	A	Y	V	G	R
Query Conservation
Alig confidence																										.					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																										.					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		L	W	F	L	V	G	L	Q	G	S	G	K	T	T	T	A	A	K	L	A	L	Y	Y	K	.	G	K	G	R	.	.	.	.	.	R	P	L	L	V	A	A	D	T	Q	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	A	A	R	E	Q	L	R	L	L	G	E	K
Template Known Secondary structure									T	T	S	S														.		T	T		.	.	.	.	.									S	S		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																										.					.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.		.	.	.	.						.	.	130	.	.	.	.	.	.	.	.																							.	140	.	.	.	.	.	.	.	.	.	150	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.		.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.			.	.	.	.	.	.
Predicted Secondary structure																																												.																					.	.
Query SS confidence																																												.																					.	.
Query Sequence		F	N	F	K	G	V	D	Q	G	K	R	V	G	E	L	S	G	G	E	R	G	R	L	H	L	A	K	L	L	Q	V	G	G	N	M	L	L	L	D	E	P	T	.	N	D	L	D	I	E	T	L	R	A	L	E	N	A	L	L	E	F	P	G	.	.	C	A	M	V	I	S
Query Conservation																																												.																					.	.
Alig confidence						.	.	.																																				.																					.	.
Template Conservation						.	.	.
Template Sequence		V	G	V	P	.	.	.	V	L	E	V	M	D	G	E	S	P	E	S	I	R	R	R	V	E	E	K	A	R	L	E	A	R	D	L	I	L	V	D	T	A	G	R	L	Q	I	D	E	P	L	M	G	E	L	A	R	L	K	E	V	L	G	P	D	E	V	L	L	V	L	D
Template Known Secondary structure			T			.	.	.						T	T																		T		S										S	S																			S
Template Predicted Secondary structure						.	.	.
Template SS confidence
		152	.	.	.				.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions