 |
Job Description | P0AFZ7 | Confidence | 2.27% | Date | Thu Jan 5 11:27:41 GMT 2012 |
Rank | 41 | Aligned Residues | 69 |
% Identity | 10% | Template | c3rvzB_ |
PDB info |
PDB header:metal transport | Chain: B: PDB Molecule:ion transport protein; |
PDBTitle: crystal structure of the navab voltage-gated sodium channel2 (ile217cys, 2.8 a)
|
Resolution | 2.80 Å |
|
 |
  |   |
276 | . | . | . | 280 | . | . | . | . | . | . | . | . | . | 290 | . | . | . | . | . | . | . | . | . | 300 | . | . | . | . | . | . | . | . | . | 310 | . | . | . | . | . | . | . | . | . | 320 | . | . | . | . | |
|
|
. | . | . | . | . | 330 | . | . | . | . | . | . | . | . | . | 340 | . | . | . | . |
Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|
|
|  |  | . | . | . |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|
Query SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . |
. |
. |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Query Sequence |   |
M | F | I | G | V | Q | F | T | L | V | V | I | C | T | L | V | L | W | F | H | N | V | Y | S | S | A | L | M | T | I | N | Q | A | F | F | Q | V | V | S | M | A | T | T | A | G | F | T | T | D | . |
. |
. |
S | I | A | R | W | P | L | F | L | P | V | L | L | L | C | S | A | F | I | G |
Query Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |   |
|
|
|
|
|   |
|   | . | . | . |
|   |   |   |   |   |   |   |   |   |   |
|
|   |   |
|
|   |
|
|
Alig confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
| . | . | . |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
Template Conservation |   |
  |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |   |   |   |   |
|   |   |   |
|
|   |   |   |   |   |   |   |
|   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |   |
|   |
|
|   |
|   |   |   |   |
Template Sequence |   |
I | A | L | M | T | L | F | F | Y | I | F | A | I | M | A | T | Q | L | F | G | E | R | F | P | E | W | F | G | T | L | G | E | S | F | Y | T | L | F | Q | V | M | T | L | E | S | W | S | M | G | I | V | R | P | L | M | E | V | Y | P | Y | A | W | V | F | F | I | P | F | I | F | V | V |
Template Known Secondary structure |   |
 |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T |
|  |  |  |  | S | S |  |  |  |  |  |  |  |  |  |  |  |  | T | T | T | T |
|
|
|
|
|  |  |  |  |  | T | T |
| G | G | G |  |  |  |  |  |  |  |  |  |  |  |
Template Predicted Secondary structure |   |
 |  |  |  |  |  |  |  |  |
|
|  |  |  |  |  |  |
|
|
|
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |  |
|
|
|  |  |  |  |  |  |  |  |  |  |  |  |
|  |  |  |  |  |  |  |  |  |  |  |  |  |  |
Template SS confidence |   |
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
|
  |   |
2134 | . | . | . | . | . | 2140 | . | . | . | . | . | . | . | . | . | 2150 | . | . | . | . | . | . | . | . | . | 2160 | . | . | . | . | . | . | . | . | . | 2170 | . | . | . | . | . | . | . | . | . | 2180 | . | . | . | . | . | . | . | . | . | 2190 | . | . | . | . | . | . | . | . | . | 2200 | . | . | . | . | . |
  |
No model constructed - rank, confidence too low
Phyre is for academic use only
Please cite: Protein structure prediction on
the web: a case study using the Phyre server |
Kelley LA and Sternberg MJE. Nature Protocols
4, 363 - 371 (2009) [pdf] [Import into BibTeX] |
  |
|
|