Job Description P0AFZ7 Confidence 100.00% Date Thu Jan 5 11:27:41 GMT 2012 Rank 1 Aligned Residues 466 % Identity 69% Template c3pjzA_ PDB info PDB header:transport protein Chain: A: PDB Molecule:potassium uptake protein trkh; PDBTitle: crystal structure of the potassium transporter trkh from vibrio2 parahaemolyticus Resolution 3.51 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
Predicted Secondary structure
Query SS confidence
Query Sequence		M	H	F	R	A	I	T	R	I	V	G	L	L	V	I	L	F	S	G	T	M	I	I	P	G	L	V	A	L	I	Y	R	D	G	A	G	R	A	F	T	Q	T	F	F	V	A	L	A	I	G	S	M	L	W	W	P	N	R	K	E	K	G	E	L	K	S	R	E	G	F	L	I	V	V	L	F	W	T	V	L
Query Conservation
Alig confidence
Template Conservation
Template Sequence		M	Q	F	R	S	I	I	R	I	V	G	L	L	L	A	L	F	S	V	T	M	L	A	P	A	L	V	A	L	L	Y	R	D	G	A	G	V	P	F	V	T	T	F	F	V	L	L	F	C	G	A	M	C	W	F	P	N	R	R	H	K	H	E	L	K	S	R	D	G	F	L	I	V	V	L	F	W	T	V	L
Template Known Secondary structure																				T	T	T					T					S	S																			T	T	T	S	T	T	T
Template Predicted Secondary structure
Template SS confidence
		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
Predicted Secondary structure
Query SS confidence
Query Sequence		G	S	V	G	A	L	P	F	I	F	S	E	S	P	N	L	T	I	T	D	A	F	F	E	S	F	S	G	L	T	T	T	G	A	T	T	L	V	G	L	D	S	L	P	H	A	I	L	F	Y	R	Q	M	L	Q	W	F	G	G	M	G	I	I	V	L	A	V	A	I	L	P	I	L	G	V	G	G	M	Q	L
Query Conservation
Alig confidence																																																																													.	.	.	.	.
Template Conservation																																																																													.	.	.	.	.
Template Sequence		G	S	A	G	S	L	P	F	L	I	A	D	N	P	N	I	S	V	T	D	A	F	F	E	S	F	S	A	L	T	T	T	G	A	T	V	I	V	G	L	D	E	L	P	K	A	I	L	F	Y	R	Q	F	L	Q	W	F	G	G	M	G	I	I	V	L	A	V	A	I	L	P	V	L	G	I	.	.	.	.	.
Template Known Secondary structure														S	S																T	T										S	S	S																					T	T	T	T	S	S	T	T	T	T	S		.	.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.	.
Template SS confidence
		81	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240
Predicted Secondary structure
Query SS confidence
Query Sequence		Y	R	A	E	M	P	G	P	L	K	D	N	K	M	R	P	R	I	A	E	T	A	K	T	L	W	L	I	Y	V	L	L	T	V	A	C	A	L	A	L	W	F	A	G	M	D	A	F	D	A	I	G	H	S	F	A	T	I	A	I	G	G	F	S	T	H	D	A	S	I	G	Y	F	D	S	P	T	I	N	T
Query Conservation
Alig confidence		.	.	.	.	.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	G	G	M	T	P	R	I	A	E	T	A	K	A	L	W	Y	I	Y	L	S	L	T	I	A	C	A	V	A	F	W	L	A	G	M	T	P	F	D	A	I	S	H	S	F	S	T	I	A	I	G	G	F	S	T	H	D	A	S	M	G	Y	F	D	S	Y	A	I	N	L
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.					S	S	S																										T			S					T	T	T					T	T					S	S	T	T	G	G	G	S	S			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
													156	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.			.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.
Predicted Secondary structure																									.	.
Query SS confidence																									.	.
Query Sequence		I	I	A	I	F	L	L	I	S	G	C	N	Y	G	L	H	F	S	L	L	S	G	R	.	.	S	L	K	V	Y	W	R	D	P	E	F	R	M	F	I	G	V	Q	F	T	L	V	V	I	C	T	L	V	L	W	F	H	N	V	Y	S	S	A	L	M	T	I	N	Q	A	F	F	Q	V	V	S	M	A	T	T
Query Conservation																									.	.
Alig confidence																									.	.
Template Conservation
Template Sequence		I	T	V	V	F	L	L	I	S	A	C	N	F	T	L	H	F	A	A	F	A	S	G	G	V	H	P	K	Y	Y	W	K	D	P	E	F	R	A	F	I	F	I	Q	V	L	L	F	L	V	C	F	L	L	L	L	K	H	H	S	Y	T	S	P	Y	D	A	F	D	Q	A	L	F	Q	T	V	S	I	S	T	T
Template Known Secondary structure											T	S									T	T	T	S	T	T							T	S																								T	T			S	S															T	T	T	T
Template Predicted Secondary structure
Template SS confidence
		241	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320
		319	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	F	T	T	D	S	I	A	R	W	P	L	F	L	P	V	L	L	L	C	S	A	F	I	G	G	C	A	G	S	T	G	G	G	L	K	V	I	R	I	L	L	L	F	K	Q	G	N	R	E	L	K	R	L	V	H	P	N	A	V	Y	S	I	K	L	G	N	R	A	L	P	E	R	I	L	E	A	V	W
Query Conservation
Alig confidence
Template Conservation
Template Sequence		A	G	F	T	T	T	G	F	A	D	W	P	L	F	L	P	V	L	L	L	F	S	S	F	I	G	G	C	A	G	S	T	G	G	G	M	K	V	I	R	I	L	L	L	T	L	Q	G	A	R	E	L	K	R	L	V	H	P	R	A	V	Y	T	I	K	V	G	G	S	A	L	P	Q	R	V	V	D	A	V	W
Template Known Secondary structure						S				S	S			T										T	T	S		S		T	T	S	S			S	S																						S	S	S						S	S	S				T	T	T
Template Predicted Secondary structure
Template SS confidence
		321	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400
		399	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	F	F	S	A	Y	A	L	V	F	I	V	S	M	L	A	I	I	A	T	G	V	D	D	F	S	A	F	A	S	V	V	A	T	L	N	N	L	G	P	G	L	G	V	V	A	D	N	F	T	S	M	N	P	V	A	K	W	I	L	I	A	N	M	L	F	G	R	L	E	V	F	T	L	L	V	L	F	T	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		G	F	F	S	A	Y	A	L	V	F	V	V	C	M	L	G	L	I	A	T	G	M	D	E	L	S	A	F	S	A	V	A	A	T	L	N	N	L	G	P	G	L	G	E	V	A	L	H	F	G	D	V	N	D	K	A	K	W	V	L	I	V	S	M	L	F	G	R	L	E	I	F	T	L	L	I	L	L	T	P
Template Known Secondary structure																						S	S													T	T	T			S			S	S	S					S	S	S																	T	T	T					T	T	S		S
Template Predicted Secondary structure
Template SS confidence
		401	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480
		479	480	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	F	W	R
Query Conservation
Alig confidence
Template Conservation
Template Sequence		T	F	W	R
Template Known Secondary structure		T	T
Template Predicted Secondary structure
Template SS confidence
		481	.	.	.