Job Description P77265 Confidence 97.79% Date Thu Jan 5 12:26:59 GMT 2012 Rank 89 Aligned Residues 196 % Identity 15% Template c3thxB_ PDB info PDB header:dna binding protein/dna Chain: B: PDB Molecule:dna mismatch repair protein msh3; PDBTitle: human mutsbeta complexed with an idl of 3 bases (loop3) and adp Resolution 2.70 Å

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		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.								.	.	.	.	350	.
Predicted Secondary structure																																																																					.	.	.	.	.	.	.
Query SS confidence																																																																					.	.	.	.	.	.	.
Query Sequence		S	F	M	M	Y	L	G	L	M	I	W	P	M	L	A	L	A	W	M	F	N	I	V	E	R	G	S	A	A	Y	S	R	I	R	A	M	L	A	E	A	P	V	V	N	D	G	S	E	P	V	P	E	G	R	G	E	L	D	V	N	I	H	Q	F	T	Y	P	.	.	.	.	.	.	.	Q	T	D	H	P	A
Query Conservation																																																																					.	.	.	.	.	.	.
Alig confidence																																																																					.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	V	L	D	C	S	A	E	W	L	D	F	L	E	K	F	S	E	H	Y	H	S	L	C	K	A	V	H	H	L	A	T	V	D	C	I	F	S	L	A	K	V	A	K	Q	G	D	Y	C	R	P	T	V	Q	E	E	R	K	I	V	I	K	N	G	R	H	P	V	I	D	V	L	L	G	E	Q	D	Q	Y	V
Template Known Secondary structure																		G	G	G																									T	S	S	S		B						S	S																	T		S		S	S	S
Template Predicted Secondary structure
Template SS confidence
		790	.	.	.	.	.	.	.	.	.	800	.	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.
		352	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.		.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430
Predicted Secondary structure																																																																.
Query SS confidence																																																																.
Query Sequence		L	E	N	V	N	F	A	L	K	P	G	Q	M	L	G	I	C	G	P	T	G	S	G	K	S	T	L	L	S	L	I	Q	R	H	F	D	V	S	E	G	D	I	R	F	H	D	I	P	L	T	K	L	Q	L	D	S	W	R	S	R	L	A	.	V	V	S	Q	T	P	F	L	F	S	D	T	V	A	N	N	I
Query Conservation																																																																.
Alig confidence																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.										.													.	.	.	.	.
Template Conservation																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template Sequence		P	N	N	T	D	L	S	E	D	S	E	R	V	M	I	I	T	G	P	N	M	G	G	K	S	S	Y	I	K	Q	V	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	I	T	I	M	A	Q	I	G	S	Y	V	P	A	E	E	A	T	I	G	I	V	.	.	.	.	.
Template Known Secondary structure									T	T	S								S															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									T			B	S	S	S								.	.	.	.	.
Template Predicted Secondary structure																																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																							.	.	.	.	.
Template SS confidence
		870	.	.	.	.	.	.	.	.	.	880	.	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.																						.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.
		431	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.			.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.	.	.	.	.	.
Predicted Secondary structure																																														.	.
Query SS confidence																																														.	.
Query Sequence		A	L	G	C	P	N	A	T	Q	Q	E	I	E	H	V	A	R	L	A	S	V	H	D	D	I	L	R	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	M	L	S	.	.	G	G	Q	K	Q	R	I	S	I	A	R	A	L	L	V	N	A	E	I	L	I	L	D	D	A	L	S	A	V	D	G	R	T	E
Query Conservation																																														.	.
Alig confidence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.		.	.
Template Conservation		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	D	G	I	F	T	R	M	.	.	.	.	.	.	.	S	T	F	M	E	E	L	T	D	T	A	E	I	I	R	K	A	T	S	Q	S	L	V	I	L	D	E	L	G	R	G	T	S	T	H	D	G
Template Known Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S							.	.	.	.	.	.	.																			T	T							S	T	T	T	T	S
Template Predicted Secondary structure		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.								.	.	.	.	.	.	.
Template SS confidence
																															924	.	.	.	.	.	930								.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960	.	.	.	.	.	.	.
		509	510	.	.	.	.	.	.	.	.	.			520		.	.	.	.	.	.	.	.	.	530	.	.	.	.	.	.
Predicted Secondary structure													.	.		.
Query SS confidence													.	.		.
Query Sequence		H	Q	I	L	H	N	L	R	Q	W	G	.	.	Q	.	G	R	T	V	I	I	S	A	H	R	L	S	A	L	T	E
Query Conservation													.	.		.
Alig confidence													.	.		.
Template Conservation
Template Sequence		I	A	I	A	Y	A	T	L	E	Y	F	I	R	D	V	K	S	L	T	L	F	V	T	H	Y	P	P	V	C	E	L
Template Known Secondary structure															T	T									S		G	G	G	G	G
Template Predicted Secondary structure
Template SS confidence
		978	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions