Job Description P77265 Confidence 92.35% Date Thu Jan 5 12:26:59 GMT 2012 Rank 339 Aligned Residues 128 % Identity 15% Template c2v3cC_ PDB info PDB header:signaling protein Chain: C: PDB Molecule:signal recognition 54 kda protein; PDBTitle: crystal structure of the srp54-srp19-7s.s srp rna complex2 of m. jannaschii Resolution 2.50 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		354	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		N	V	N	F	A	L	K	P	G	Q	M	L	G	I	C	G	P	T	G	S	G	K	S	T	L	L	S	L	I	Q	R	H	F	D	V	S	E	G	D	I	R	F	H	D	I	P	L	T	K	L	Q	L	D	S	W	R	S	R	L	A	V	V	S	Q	T	P	F	L	F	S	D	T	V	A	N	N	I	A	L	G
Query Conservation
Alig confidence																																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		K	L	E	L	N	P	K	K	Q	N	V	I	L	L	V	G	I	Q	G	S	G	K	T	T	T	A	A	K	L	A	R	Y	I	Q	.	K	R	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	L	K	P	A	L	I	A	A	D	T	Y	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							S	S	S										S	S	S	S	T	T												.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.									S			.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																				.				.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.												.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.		.	.	.																			.	130	.	.	.	.	.	.	.	.	.
		434	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500		.	.	.	.	.	.	.	.	.	510	.	.
Predicted Secondary structure																																																																					.
Query SS confidence																																																																					.
Query Sequence		C	P	N	A	T	Q	Q	E	I	E	H	V	A	R	L	A	S	V	H	D	D	I	L	R	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	M	L	S	G	G	Q	K	Q	R	I	S	I	A	R	A	L	L	V	N	A	E	I	L	I	L	D	D	A	L	.	S	A	V	D	G	R	T	E	H	Q	I	L
Query Conservation																																																																					.
Alig confidence				.																															.	.	.	.	.	.	.	.	.	.	.	.									.	.													.
Template Conservation				.																															.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template Sequence		R	P	.	A	A	Y	E	Q	L	K	Q	L	A	E	K	I	H	V	P	I	Y	G	D	E	T	R	T	K	S	P	V	D	I	.	.	.	.	.	.	.	.	.	.	.	.	V	K	E	G	M	E	K	F	.	.	K	K	A	D	V	L	I	I	D	T	A	G	R	H	K	E	E	K	G	L	L	E	E	M	K
Template Known Secondary structure			T	.	T	G	G	G	S	S							S	S							S	S	S			S	S	S	T	T	.	.	.	.	.	.	.	.	.	.	.	.							T	T	.	.	S	S		S									S		S	S
Template Predicted Secondary structure				.																															.	.	.	.	.	.	.	.	.	.	.	.									.	.
Template SS confidence
		140	.		.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.													.	.	.	.	.	.	.	.			180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.
		513	.	.	.	.	.	.	520	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		H	N	L	R	Q	W	G	Q	G	R	T	V	I	I	S	A
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Q	I	K	E	I	T	N	P	D	E	I	I	L	V	I	D
Template Known Secondary structure			T	T	S	S	S			S
Template Predicted Secondary structure
Template SS confidence
		205	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions