Return to main results Retrieve Phyre Job Id

Job DescriptionP77265
Confidence95.48%DateThu Jan 5 12:26:59 GMT 2012
Rank149Aligned Residues123
% Identity19%Templatec2iy3A_
PDB info PDB header:rna-bindingChain: A: PDB Molecule:signal recognition particle protein ffh; PDBTitle: structure of the e. coli signal recognition particle2 bound to a translating ribosome
Resolution16.00 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   360.........370.........380.........390.........400.........410.........420.........430.........
Predicted Secondary structure 















































Query SS confidence 















































































Query Sequence  KPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGCPNATQ
Query Conservation    
    
 
 








 

 
      
 
      
           
  
 
   
   

 


  
      
Alig confidence 



























.


..................










.............

.


Template Conservation    
 





  
 




 



    .  
.................. 

 

 


 .............
 .

 
Template Sequence  KDRNLWFLVGLQGSGKTTTAAKLALYYK. GKG. . . . . . . . . . . . . . . . . . RRPLLVAADTQ. . . . . . . . . . . . . RP. AAR
Template Known Secondary structure 
SS


TTSS.TT..................



SS.............
.
Template Predicted Secondary structure 









.

..................





.............

.
Template SS confidence 















































































   96...100.........110.........120... ... ...130....... .. 140..
 
   440.........450.........460.........470.........480.........490.........500 .........510........
Predicted Secondary structure 
























.



Query SS confidence 




























































.

















Query Sequence  QEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLVNAEILILDDAL. SAVDGRTEHQILHNLRQW
Query Conservation    
   
    
   
  
  
  
 
   
  








 




     





 
.
 

      
   
   
Alig confidence 











.............



































.

















Template Conservation 


   
   

.............
        

  
    
  
     









   
  

 

  
    
Template Sequence  EQLRLLGEKVGV. . . . . . . . . . . . . PVLEVMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL
Template Known Secondary structure  T
.............


TT

T
S



SS

Template Predicted Secondary structure 

.............




















Template SS confidence 















































































   143......150.... .....160.........170.........180.........190.........200.........
 
   519520........
Predicted Secondary structure 



Query SS confidence 









Query Sequence  GQGRTVIISA
Query Conservation      


 

Alig confidence 









Template Conservation   
 






Template Sequence  GPDEVLLVLD
Template Known Secondary structure 

S
Template Predicted Secondary structure 



Template SS confidence 









   210.........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions