Job Description P77265 Confidence 96.88% Date Thu Jan 5 12:26:59 GMT 2012 Rank 103 Aligned Residues 143 % Identity 15% Template c2cvhB_ PDB info PDB header:dna binding protein Chain: B: PDB Molecule:dna repair and recombination protein radb; PDBTitle: crystal structure of the radb recombinase Resolution 2.20 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		359	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400	.	.	.	.	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.	.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	K	P	G	Q	M	L	G	I	C	G	P	T	G	S	G	K	S	T	L	L	S	L	I	Q	R	H	F	D	V	S	E	G	D	I	R	F	H	D	I	P	L	T	K	L	Q	L	D	S	W	R	S	R	L	A	V	V	S	Q	T	P	F	L	F	S	D	T	V	A	N	N	I	A	L	G	C	P	N	A	T
Query Conservation
Alig confidence																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	A	P	G	V	L	T	Q	V	Y	G	P	Y	A	S	G	K	T	T	L	A	L	Q	T	G	L	L	S	G	K	K	V	A	Y	V	D	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	G	G	F	S
Template Known Secondary structure		B		T	T	S							S	T	T	S	S														S							S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	S
Template Predicted Secondary structure																																							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		17	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.																																							.	.	.	.	.
		439	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.	.	.	.	.	.	.	470	.	.	.	.	.	.	.	.	.	480	.	.	.	.	.	.	.	.	.	490	.	.	.	.	.	.	.	.	.	500	.	.	.									.	.	.	.	.	.	510
Predicted Secondary structure																																																																			.	.	.	.	.	.	.	.
Query SS confidence																																																																			.	.	.	.	.	.	.	.
Query Sequence		Q	Q	E	I	E	H	V	A	R	L	A	S	V	H	D	D	I	L	R	L	P	Q	G	Y	D	T	E	V	G	E	R	G	V	M	L	S	G	G	Q	K	Q	R	I	S	I	A	R	A	L	L	V	N	A	E	I	L	I	L	D	D	A	L	S	A	V	.	.	.	.	.	.	.	.	D	G	R	T	E	H	Q
Query Conservation																																																																			.	.	.	.	.	.	.	.
Alig confidence																		.	.	.	.	.																																													.	.	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.
Template Sequence		P	E	R	L	V	Q	M	A	E	T	R	G	L	N	P	E	.	.	.	.	.	E	A	L	S	R	F	I	L	F	T	P	S	D	F	K	E	Q	R	R	V	I	G	S	L	K	K	T	V	D	S	N	F	A	L	V	V	V	D	S	I	T	A	H	Y	R	A	E	E	N	R	S	G	L	I	A	E	L	S	R
Template Known Secondary structure												T	T					.	.	.	.	.													S	S																T	T										S		S	B	T	T	B
Template Predicted Secondary structure																		.	.	.	.	.
Template SS confidence
		59	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.						.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.
		511	.	.	.	.	.	.	.	.	520			.	.	.	.	.	.	.	.	.	530	.															.	.	.	.	.	.	.	.	540	.	.	.	.
Predicted Secondary structure												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	L	H	N	L	R	Q	W	G	Q	.	.	G	R	T	V	I	I	S	A	H	R	L	.	.	.	.	.	.	.	.	.	.	.	.	.	.	S	A	L	T	E	A	S	E	I	I	V	M	Q
Query Conservation												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence												.	.												.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		Q	L	Q	V	L	L	W	I	A	R	K	H	N	I	P	V	I	V	I	N	Q	V	H	F	D	S	R	T	E	M	T	K	P	V	A	E	Q	T	L	G	Y	R	C	K	D	I	L	R	L	D
Template Known Secondary structure														T									S	S	S	S			S	S				S	S		S	T	T						S
Template Predicted Secondary structure
Template SS confidence
		134	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions