Return to main results Retrieve Phyre Job Id

Job DescriptionP0A720
Confidence98.61%DateThu Jan 5 11:04:32 GMT 2012
Rank130Aligned Residues198
% Identity15%Templatec3crqA_
PDB info PDB header:transferaseChain: A: PDB Molecule:trna delta(2)-isopentenylpyrophosphate PDBTitle: structure of trna dimethylallyltransferase: rna2 modification through a channel
Resolution2.20 Å

  Insertion relative to template
  Deletion relative to template
  Catalytic residue from the CSA
 
Detailed help on interpreting your alignment


   3......10.........20.........30...... ...40. ........50.........60.........70.........
Predicted Secondary structure 












..


.













Query SS confidence 

































. .




.





































Query Sequence  SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMV. . FTREP. GGTQLAEKLRSLVLDIKSVGDEVITDKAEVLMFYAARV
Query Conservation    

 
 
  







  
   
    
    ..  
  .                                      
Alig confidence 

































..




.

























....







Template Conservation 
 

 
 







 

  

     






 



 
 





   
   
 




     
....  
   
 
Template Sequence  PPAIFLMGPTAAGKTDLAMALADALPCELISVDSALIYRGMDIGTAKPSRELLARYPHRLIDIRDPAE. . . . SYSAAEFR
Template Known Secondary structure 

STTSSTTS


TTTTBTT

TTTT


S
SSS
B
TTS....


Template Predicted Secondary structure 

































....


Template SS confidence 















































































   5....10.........20.........30.........40.........50.........60.........70.. .......80
 
   80.........90........ .100.........110.........120.........130 .
Predicted Secondary structure 



...........................







.
Query SS confidence 


















. . . . . . . . . . . . . . . . . . . . . . . . . . .































.
Query Sequence  QLVETVIKPALANGTWVIG. . . . . . . . . . . . . . . . . . . . . . . . . . . DRHDLSTQAYQGGGRGIDQHMLATLRDAVLGD. F
Query Conservation                     ...........................
                               . 
Alig confidence 


















...........................































.
Template Conservation    
   
  
   
  






 


 


 
 
     
      
  
  

  

  
   


 

  
      
Template Sequence  ADALAAMAKATARGRIPLLVGGTMLYYKALLEGLPYTVAQLAIAPEQRQVLHARIAQRFRQMLEQGFIAEVEALHARSDL
Template Known Secondary structure  TT

S




S
SSTT
TT
Template Predicted Secondary structure 























Template SS confidence 















































































   81........90.........100.........110.........120.........130.........140.........150.........160
 
   132.......140.........150.........160.........170.........180.........190.........200......
Predicted Secondary structure 


















Query SS confidence 










































































Query Sequence  RPDLTLYLDVTPEVGLKRARARGELDRIEQESFDFFNRTRARYLELAAQDKSIHTIDATQPLEAVMDAIRTTVTH
Query Conservation         
         
   
                                 

     


   
   
  
Alig confidence 




























































..











Template Conservation          



 
   

 
     
        

 




 



      
 
    ..     
   

 
Template Sequence  HAGLPSIRAVGYRQVWDYLDGKLSYAEMTERGIIATRQLAKRQFTWLRSWSHLHWMDSLAG. . DNLPRALRYLKT
Template Known Secondary structure 
TTSTGGGSTTTTSS
T
SS
TT
S..
Template Predicted Secondary structure 




















..

Template SS confidence 










































































   246...250.........260.........270.........280.........290.........300...... ...310........
 
Download:Text version

No model constructed - rank, confidence too low




Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
 
© Structural Bioinformatics Group, Imperial College, London
Lawrence Kelley, Benjamin Jefferys 
Disclaimer
Terms and Conditions