Job Description P0A720 Confidence 98.95% Date Thu Jan 5 11:04:32 GMT 2012 Rank 122 Aligned Residues 101 % Identity 22% Template c1yj5B_ PDB info PDB header:transferase Chain: B: PDB Molecule:5' polynucleotide kinase-3' phosphatase catalytic domain; PDBTitle: molecular architecture of mammalian polynucleotide kinase, a dna2 repair enzyme Resolution 2.80 Å

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		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
Predicted Secondary structure
Query SS confidence
Query Sequence		R	S	K	Y	I	V	I	E	G	L	E	G	A	G	K	T	T	A	R	N	V	V	V	E	T	L	E	Q	L	G	I	R	D	M	V	F	T	R	E	P	G	G	T	Q	L	A	E	K	L	R	S	L	V	L	D	I	K	S	V	G	D	E	V	I	T	D	K	A	E	V	L	M	F	Y	A	A	R	V	Q	L
Query Conservation
Alig confidence																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		N	P	E	V	V	V	A	V	G	F	P	G	A	G	K	S	T	F	I	Q	E	H	L	V	S	A	G	Y	V	H	V	N	R	D	T	L	G	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	W	Q	R
Template Known Secondary structure		S										T	T	S	S									T	G	G	G	T											S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		363	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.	.	390	.	.	.	.	.	.	.	.	.	400																																								.	.	.
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		V	E	T	V	I	K	P	A	L	A	N	G	T	W	V	I	G	D	R	H	D	L	S	T	Q	A	Y	Q	G	G	G	R	G	I	D	Q	H	M	L	A	T	L	R	D	A	V	L	G	D	F	R	P	D	L	T	L	Y	L	D	V	T	P	E	V	G	L	K	R	A	R	A	R
Query Conservation
Alig confidence																					.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																					.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		C	V	S	S	C	Q	A	A	L	R	Q	G	K	R	V	V	I	D	N	.	.	.	.	.	.	.	.	.	.	.	.	T	N	P	D	V	P	S	R	A	R	Y	I	Q	C	A	K	D	A	G	V	P	C	R	C	F	N	F	C	A	T	I	E	Q	A	R	H	N	N	R	F	R
Template Known Secondary structure												T	T							S	.	.	.	.	.	.	.	.	.	.	.	.				S															T
Template Predicted Secondary structure																					.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		404	.	.	.	.	.	410	.	.	.	.	.	.	.	.	.	420	.	.													.	.	.	.	.	.	.	430	.	.	.	.	.	.	.	.	.	440	.	.	.	.	.	.	.	.	.	450	.	.	.	.	.	.	.	.	.	460	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions