Job Description P0A720 Confidence 97.40% Date Thu Jan 5 11:04:32 GMT 2012 Rank 264 Aligned Residues 177 % Identity 14% Template c1kjwA_ PDB info PDB header:neuropeptide Chain: A: PDB Molecule:postsynaptic density protein 95; PDBTitle: sh3-guanylate kinase module from psd-95 Resolution 1.80 Å

Show / Hide SS confidence

Show / Hide Conservation and Alignment quality

		2	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.		.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.		.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																.																								.
Query SS confidence																																.																								.
Query Sequence		R	S	K	Y	I	V	I	E	G	L	E	G	A	G	K	T	T	A	R	N	V	V	V	E	T	L	E	Q	L	G	.	I	R	D	M	V	F	T	R	E	P	G	G	T	Q	L	A	E	K	L	R	S	L	V	.	L	D	I	K	S	V	G	D	E	V	I	T	D	K	A	E	V	L	M	F	Y	A	A	R	V
Query Conservation																																.																								.
Alig confidence																.	.	.														.																								.
Template Conservation																.	.	.
Template Sequence		Y	A	R	P	I	I	I	L	G	P	T	K	D	R	.	.	.	A	N	D	D	L	L	S	E	F	P	D	K	F	G	S	C	V	P	H	T	T	R	P	K	R	E	Y	E	I	D	G	R	D	Y	H	F	V	S	S	R	E	K	M	E	K	D	I	Q	A	H	K	F	I	E	A	G	Q	Y	N	S	H	L	Y
Template Known Secondary structure		S								S	T	T				.	.	.										T	T	T										S				T	T			B	T	T	T	B				S											T	T									T	T
Template Predicted Secondary structure																.	.	.
Template SS confidence
		533	.	.	.	.	.	.	540	.	.	.	.	.	.				.	.	.	550	.	.	.	.	.	.	.	.	.	560	.	.	.	.	.	.	.	.	.	570	.	.	.	.	.	.	.	.	.	580	.	.	.	.	.	.	.	.	.	590	.	.	.	.	.	.	.	.	.	600	.	.	.	.	.	.	.	.	.
		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		Q	L	V	E	T	V	I	K	P	A	L	A	N	G	T	W	V	I	G	D	R	H	D	L	S	T	Q	A	Y	Q	G	G	G	R	G	I	D	Q	H	M	L	A	T	L	R	D	A	V	L	G	D	F	R	P	D	L	T	L	Y	L	D	V	T	P	E	V	G	L	K	R	A	R	A	R	G	E	L	D	R	I
Query Conservation
Alig confidence																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Conservation																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template Sequence		G	T	S	V	Q	S	V	R	E	V	A	E	Q	G	K	H	C	I	L	D	V	S	A	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	N	A	V	R	R	L	Q	A	A	H	L	H	P	I	A	I	F	I	R	P	R	S	L	E	N	V	L	E	I	.	.	N	K	R	I	T	E	E	Q
Template Known Secondary structure														T	T									T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T								T	T											S	S								.	.		T	T	S
Template Predicted Secondary structure																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																														.	.
Template SS confidence
		610	.	.	.	.	.	.	.	.	.	620	.	.	.	.	.	.	.	.	.	630	.	.																			.	.	.	.	.	.	.	640	.	.	.	.	.	.	.	.	.	650	.	.	.	.	.	.	.	.	.	660	.			.	.	.	.	.	.	.	.
		160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	Q	E	S	F	D	F	F	N	R	T	R	A	R	Y	L	E	L	A	A	Q	D	K	S	I	H	T	I	D	A	T	Q	P	L	E	A	V	M	D	A	I	R	T	T	V	T	H	W
Query Conservation
Alig confidence																						.	.	.	.	.							.
Template Conservation																						.	.	.	.	.							.
Template Sequence		A	R	K	A	F	D	R	A	T	K	L	E	Q	E	F	T	E	C	F	S	.	.	.	.	.	A	I	V	E	G	D	.	S	F	E	E	I	Y	H	K	V	K	R	V	I	E	D	L
Template Known Secondary structure																	G	G	G		S	.	.	.	.	.						S	.	S
Template Predicted Secondary structure																						.	.	.	.	.							.
Template SS confidence
		670	.	.	.	.	.	.	.	.	.	680	.	.	.	.	.	.	.	.	.						690	.	.	.	.	.		.	.	.	.	700	.	.	.	.	.	.	.	.	.	710	.

No model constructed - rank, confidence too low

---

Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions