Job Description P07001 Confidence 97.54% Date Thu Jan 5 10:59:54 GMT 2012 Rank 85 Aligned Residues 161 % Identity 16% Template c3donA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:shikimate dehydrogenase; PDBTitle: crystal structure of shikimate dehydrogenase from staphylococcus2 epidermidis Resolution 2.10 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																			.	140
Predicted Secondary structure																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	L	L	N	P	G	T	T	L	V	S	F	I	W	P	A	Q	N	.	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R
Query Conservation																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		F	Q	S	L	N	L	E	N	T	Y	E	A	I	N	V	P	V	N	Q	F	Q	D	I	K	K	I	I	S	E	K	S	I	D	G	F	N	V	T	I	P	H	K	E	R	I	I	P	Y	L	D	D	I	N	E	Q	A	K	S	V	G	A	V	N	T	V	L	V	K	D	G	K	W	I	G	Y	N	T	D	G	I
Template Known Secondary structure					T	T												G	G	G	G	G	G								T	T		S						T	T		T	T	T	T	G	G	G		S										T									T	T
Template Predicted Secondary structure
Template SS confidence
		23	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	N	S	L	G	A	.	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	F	K	E	E
Query Conservation																																																			.
Alig confidence													.	.	.	.	.	.	.	.	.	.																													.												.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation													.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		G	Y	V	N	G	L	K	Q	I	Y	E	.	.	.	.	.	.	.	.	.	.	G	I	E	D	A	Y	I	L	I	L	G	A	G	G	A	S	K	G	I	A	N	E	L	Y	K	I	V	R	P	T	L	T	V	A	N	R	T	M	S	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	T	.	.	.	.	.	.	.	.	.	.	T	G	G	G									S												T	T			S							S		G	G	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure													.	.	.	.	.	.	.	.	.	.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		103	.	.	.	.	.	.	110	.	.	.											.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	G	D	G	Y	A	K	V	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L	A
Query Conservation
Alig confidence		.	.	.	.	.	.	.																															.	.							.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.																															.	.							.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	F	N	N	W	S	L	N	I	N	K	I	N	L	S	H	A	E	S	H	L	D	E	F	D	I	I	I	N	T	T	.	.	P	D	S	V	I	S	.	.	.	.	.	.	.	L	N	R	L	A	S	H	T	L	V	S	D	I	V
Template Known Secondary structure		.	.	.	.	.	.	.	G	T	T			S													T	G	G	G		S							.	.				S	S		.	.	.	.	.	.	.		T	T			S	S						S
Template Predicted Secondary structure		.	.	.	.	.	.	.																															.	.							.	.	.	.	.	.	.
Template SS confidence
									154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.			.	.	.	.	.	.								190	.	.	.	.	.	.	.	.	.	200	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions