Job Description P07001 Confidence 93.20% Date Thu Jan 5 10:59:54 GMT 2012 Rank 431 Aligned Residues 123 % Identity 28% Template c2tmgD_ PDB info PDB header:oxidoreductase Chain: D: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: thermotoga maritima glutamate dehydrogenase mutant s128r,2 t158e, n117r, s160e Resolution 2.90 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190		.	.	.	.	.	.	.												.	.	200	.	.	.	.	.
Predicted Secondary structure																																																.							.								.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.							.								.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	.	N	S	L	G	A	I	.	V	R	A	F	D	T	R	.	.	.	.	.	.	.	.	.	.	.	P	E	V	K	E	Q	V	Q
Query Conservation																																																.							.								.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																								.							.								.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		K	V	C	A	G	L	A	M	D	V	L	G	I	.	.	.	.	.	.	.	.	.	.	D	P	K	K	A	T	V	A	V	Q	G	F	G	N	V	G	Q	F	A	A	L	L	I	S	Q	E	L	G	S	K	V	V	A	V	S	D	S	R	G	G	I	Y	N	P	E	G	F	D	V	E	E	L	I	R	Y	K	K
Template Known Secondary structure												T	T		.	.	.	.	.	.	.	.	.	.		T	T	T									S													T	T										S	S						T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		193	.	.	.	.	.	.	200	.	.	.	.	.											.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.
		206	.	.								.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure					.	.	.	.	.	.	.
Query SS confidence					.	.	.	.	.	.	.
Query Sequence		S	M	G	.	.	.	.	.	.	.	A	E	F	L	E	L	D	F	K	E	E	A	G	S	G	D	G	Y	A	K	V	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G
Query Conservation					.	.	.	.	.	.	.
Alig confidence					.	.	.	.	.	.	.							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		E	H	G	T	V	V	T	Y	P	K	G	E	R	I	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	L	E	L	D	V	D	I	L	V	P	A	A	L	.	.	.	.	.	.	E	G	A	I	H	A	G	N	A	E	R	I	K	A	K
Template Known Secondary structure			S	S		S	T	T		S	S							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.				T	T		S		S						S		.	.	.	.	.	.	T	T	S	B						T	T				S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		263	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.																												.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.							.	.	.	.	.	300	.	.	.	.	.	.	.	.	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	V	D	L	A	A	Q	N	G	G	N	C	E	Y	T	V	P	G	E	I	F	T	T	E	N	G	V	K	V	I
Query Conservation
Alig confidence					.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		A	V	V	.	.	.	.	.	.	E	G	A	N	G	P	T	T	P	E	A	D	E	I	L	S	R	R	G	I	L	V	V
Template Known Secondary structure					.	.	.	.	.	.			S	S	S		B											T	T
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		310	.	.							.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions