Job Description P07001 Confidence 100.00% Date Thu Jan 5 10:59:54 GMT 2012 Rank 4 Aligned Residues 339 % Identity 18% Template c2qrlA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:saccharopine dehydrogenase, nad+, l-lysine- PDBTitle: crystal structure of oxalylglycine-bound saccharopine2 dehydrogenase (l-lys forming) from saccharomyces cerevisiae Resolution 1.60 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.				.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.
Predicted Secondary structure																																																												.	.	.
Query SS confidence																																																												.	.	.
Query Sequence		M	R	I	G	I	P	R	E	R	L	T	N	E	T	R	V	A	A	T	P	K	T	V	E	Q	L	L	K	L	G	F	T	V	A	V	E	S	G	A	G	Q	L	A	S	F	D	D	K	A	F	V	Q	A	G	A	E	I	V	.	.	.	E	G	N	S	V	W	Q	S	E	I	I	L	K	V	N	A	P	L	D
Query Conservation																																																												.	.	.
Alig confidence																																										.	.																	.	.	.
Template Conservation																																										.	.
Template Sequence		V	T	L	H	L	R	A	E	T	K	P	L	E	A	R	A	A	L	T	P	T	T	V	K	K	L	I	A	K	G	F	K	I	Y	V	E	D	S	P	Q	.	.	S	T	F	N	I	N	E	Y	R	Q	A	G	A	I	I	V	P	A	G	S	W	K	T	A	P	R	D	R	I	I	I	G	L	K	E	M	P	E
Template Known Secondary structure											S	T	T					S	S											T	T									T	T	.	.	S	S	S								T	T						T	T	G	G	G	G	S		T	T	S					S	S				T
Template Predicted Secondary structure																																										.	.
Template SS confidence
		4	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.			.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.
		78	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.			.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.		.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.
Predicted Secondary structure																						.	.																																										.
Query SS confidence																						.	.																																										.
Query Sequence		D	E	I	A	L	L	N	P	G	T	T	L	V	S	F	I	W	P	A	Q	.	.	N	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	.	Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T
Query Conservation																						.	.																																										.
Alig confidence																						.	.																								.																		.
Template Conservation																																															.
Template Sequence		T	D	T	F	P	L	V	H	E	H	I	Q	F	A	H	C	Y	K	D	Q	A	G	W	Q	N	V	L	M	R	F	I	K	G	H	G	T	L	Y	D	L	E	F	L	E	N	.	D	Q	G	R	R	V	A	A	F	G	F	Y	A	G	F	A	G	A	A	L	G	V	R	D	W	A	F	K	Q	T	H	S	D	D
Template Known Secondary structure		T			S				S									S	S			T	T												T						G	G	G		B		.	T	T	S		B	S																									S		T	T
Template Predicted Secondary structure																																															.
Template SS confidence
		82	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.		.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160
		155	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.					.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230
Predicted Secondary structure																																										.	.	.	.
Query SS confidence																																										.	.	.	.
Query Sequence		G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	N	S	L	G	A	I	V	R	A	F	.	.	.	.	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	F	K	E	E	A	G	S	G	D	G	Y	A	K	V	M
Query Conservation																																										.	.	.	.
Alig confidence																																	.									.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																	.																																						.	.	.	.	.	.	.	.	.	.	.
Template Sequence		E	D	L	P	A	V	S	P	Y	P	N	E	K	A	L	V	K	D	V	T	K	D	Y	K	E	A	L	A	T	G	A	.	R	K	P	T	V	L	I	I	G	A	L	G	R	C	G	S	G	A	I	D	L	L	H	K	V	G	I	P	D	A	N	I	L	K	W	D	I	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure											S	S																		T	T		.									T	T	T	S														T			G	G	G							.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																	.																																						.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		161	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.		.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.
		231	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.								.	.	.	.	.	300	.	.	.
Predicted Secondary structure																																																																		.	.	.	.	.	.	.
Query SS confidence																																																																		.	.	.	.	.	.	.
Query Sequence		S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L	A	A	Q	N	G	G	N	C	E	Y	.	.	.	.	.	.	.	T	V	P	G	E	I	F	T	T
Query Conservation																																																																		.	.	.	.	.	.	.
Alig confidence		.	.	.	.																																																													.	.	.	.	.	.	.
Template Conservation		.	.	.	.
Template Sequence		.	.	.	.	K	E	T	S	R	G	G	P	F	D	E	I	P	Q	A	D	I	F	I	N	C	I	Y	L	S	K	P	I	A	P	F	T	N	M	E	K	L	N	N	P	N	R	R	L	R	T	V	V	D	V	S	A	D	T	T	N	P	H	N	P	I	P	I	Y	T	V	A	T	V	F	N	K	P	T	V	L
Template Known Secondary structure		.	.	.	.				T	T		S			T					S	S										S	S				S									T	T									T	T			T	T		S	S		S	S		S						B	T	T	B
Template Predicted Secondary structure		.	.	.	.
Template SS confidence
						229	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.
		304	.						.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.
Predicted Secondary structure				.	.	.	.	.
Query SS confidence				.	.	.	.	.
Query Sequence		E	N	.	.	.	.	.	G	V	K	V	I	G	Y	T	D	L	P	G	R	L	P	T	Q	S	S	Q	L	Y	G	T	N	L	V	N	L	L	K	L	L	C	K	E	K	D	G	N	I	T	V	D	F	D	D	V	V	I	R	G	V
Query Conservation				.	.	.	.	.
Alig confidence				.	.	.	.	.
Template Conservation
Template Sequence		V	P	T	T	A	G	P	K	L	S	V	I	S	I	D	H	L	P	S	L	L	P	R	E	A	S	E	F	F	S	H	D	L	L	P	S	L	E	L	L	P	Q	R	K	T	A	P	V	W	V	R	A	K	K	L	F	D	R	H	C
Template Known Secondary structure					S	S	S	S								T	T	G	G	G	G	S																	T	T	G	G	G	T	T	T
Template Predicted Secondary structure
Template SS confidence
		305	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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