Job Description P07001 Confidence 97.05% Date Thu Jan 5 10:59:54 GMT 2012 Rank 121 Aligned Residues 183 % Identity 18% Template c1vi2B_ PDB info PDB header:oxidoreductase Chain: B: PDB Molecule:shikimate 5-dehydrogenase 2; PDBTitle: crystal structure of shikimate-5-dehydrogenase with nad Resolution 2.10 Å

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		80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.		.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.																			.	140
Predicted Secondary structure																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		I	A	L	L	N	P	G	T	T	L	V	S	F	I	W	P	A	Q	N	.	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	Y	R
Query Conservation																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence																					.																																									.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation
Template Sequence		L	E	K	A	G	L	P	F	T	Y	X	A	F	E	V	D	N	D	S	F	P	G	A	I	E	G	L	K	A	L	K	X	R	G	T	G	V	S	X	P	N	K	Q	L	A	C	E	Y	V	D	E	L	T	P	A	A	K	L	V	G	A	I	N	T	I	V	N	D	D	G	Y	L	R	G	Y	N	T	D	G	T
Template Known Secondary structure					T	T		S										T	T	T												T		S						T	T	S					G	G	G		S										T			S						T	T
Template Predicted Secondary structure
Template SS confidence
		30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.
		141	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.		190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.
Query SS confidence																																																			.
Query Sequence		A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	N	S	L	G	A	.	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	F	K	E	E
Query Conservation																																																			.
Alig confidence																		.	.	.	.	.	.	.	.	.	.																								.																										.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template Sequence		G	H	I	R	A	I	K	E	S	G	F	D	I	K	G	K	.	.	.	.	.	.	.	.	.	.	T	X	V	L	L	G	A	G	G	A	S	T	A	I	G	A	Q	G	A	I	E	G	L	K	E	I	K	L	F	N	R	R	D	E	F	F	D	K	A	L	A	F	A	Q	R	V	N	E	N	.	.	.	.	.
Template Known Secondary structure											T				T	T		.	.	.	.	.	.	.	.	.	.								S													T	T										S	S																	.	.	.	.	.
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.																																																		.	.	.	.	.
Template SS confidence
		110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.											.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.
		220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		A	G	S	G	D	G	Y	A	K	V	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L
Query Conservation
Alig confidence		.	.	.	.	.	.	.
Template Conservation		.	.	.	.	.	.	.
Template Sequence		.	.	.	.	.	.	.	T	D	C	V	V	T	V	T	D	L	A	D	Q	Q	A	F	A	E	A	L	A	S	A	D	I	L	T	N	G	T	K	V	G	X	K	P	L	E	N	E	S	L	V	N	D	I	S	L	L	H	P	G	L	L	V	T	E	C
Template Known Secondary structure		.	.	.	.	.	.	.	S	S								T	T											S		S						S	S	T	T	S	T	T		T	T			S		S		G	G	G			T	T
Template Predicted Secondary structure		.	.	.	.	.	.	.
Template SS confidence
									175	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions