Job Description P07001 Confidence 100.00% Date Thu Jan 5 10:59:54 GMT 2012 Rank 5 Aligned Residues 344 % Identity 46% Template c1l7eC_ PDB info PDB header:oxidoreductase Chain: C: PDB Molecule:nicotinamide nucleotide transhydrogenase, PDBTitle: crystal structure of r. rubrum transhydrogenase domain i2 with bound nadh Resolution 1.90 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.			60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																													.	.
Query SS confidence																																																													.	.
Query Sequence		M	R	I	G	I	P	R	E	R	L	T	N	E	T	R	V	A	A	T	P	K	T	V	E	Q	L	L	K	L	G	F	T	V	A	V	E	S	G	A	G	Q	L	A	S	F	D	D	K	A	F	V	Q	A	G	A	E	I	V	E	.	.	G	N	S	V	W	Q	S	E	I	I	L	K	V	N	A	P	L	D	D
Query Conservation																																																													.	.
Alig confidence																																																													.	.
Template Conservation
Template Sequence		M	K	I	A	I	P	K	E	R	R	P	G	E	D	R	V	A	I	S	P	E	V	V	K	K	L	V	G	L	G	F	E	V	I	V	E	Q	G	A	G	V	G	A	S	I	T	D	D	A	L	T	A	A	G	A	T	I	A	S	T	A	A	Q	A	L	S	Q	A	D	V	V	W	K	V	Q	R	P	M	T	A
Template Known Secondary structure											S	T	T					S												T	T							T	T	T	T	G	G	G	T									T	T					S	S						T	T		S											G
Template Predicted Secondary structure
Template SS confidence
		801	.	.	.	.	.	.	.	.	810	.	.	.	.	.	.	.	.	.	820	.	.	.	.	.	.	.	.	.	830	.	.	.	.	.	.	.	.	.	840	.	.	.	.	.	.	.	.	.	850	.	.	.	.	.	.	.	.	.	860	.	.	.	.	.	.	.	.	.	870	.	.	.	.	.	.	.	.	.	880
							79	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.
Predicted Secondary structure		.	.	.	.	.
Query SS confidence		.	.	.	.	.
Query Sequence		.	.	.	.	.	E	I	A	L	L	N	P	G	T	T	L	V	S	F	I	W	P	A	Q	N	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F
Query Conservation		.	.	.	.	.
Alig confidence		.	.	.	.	.
Template Conservation
Template Sequence		E	E	G	T	D	E	V	A	L	I	K	E	G	A	V	L	M	C	H	L	G	A	L	T	N	R	P	V	V	E	A	L	T	K	R	K	I	T	A	Y	A	M	E	L	M	P	R	I	S	R	A	Q	S	M	D	I	L	S	S	Q	S	N	L	A	G	Y	R	A	V	I	D	G	A	Y	E	F	A	R	A	F
Template Known Secondary structure		G	G	S	S		S	G	G	G	S		T	T									G	G	G		S									T	T						G	G	G					G	G	G	T	T	T																							S	S		S
Template Predicted Secondary structure
Template SS confidence
		881	.	.	.	.	.	.	.	.	890	.	.	.	.	.	.	.	.	.	900	.	.	.	.	.	.	.	.	.	910	.	.	.	.	.	.	.	.	.	920	.	.	.	.	.	.	.	.	.	930	.	.	.	.	.	.	.	.	.	940	.	.	.	.	.	.	.	.	.	950	.	.	.	.	.	.	.	.	.	960
		154	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	N	S	L	G	A	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	F	K	E	E	A	G	S	G	D	G	Y	A	K	V	M	S	D	A
Query Conservation
Alig confidence																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		P	M	M	M	T	A	A	G	T	V	P	P	A	R	V	L	V	F	G	V	G	V	A	G	L	Q	A	I	A	T	A	K	R	L	G	A	V	V	M	A	T	D	V	R	A	A	T	K	E	Q	V	E	S	L	G	G	K	F	I	K	Q	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure		S					S	S														S													T	T								S	S	T	T	S					T	T	T	T							.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																																															.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		961	.	.	.	.	.	.	.	.	970	.	.	.	.	.	.	.	.	.	980	.	.	.	.	.	.	.	.	.	990	.	.	.	.	.	.	.	.	.	1000	.	.	.	.	.	.	.	.	.	1010	.	.	.	.	.	.	.	.	.	1020	.
		234	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L	A	A	Q	N	G	G	N	C	E	Y	T	V	P	G	E	I	F	T	T	E	N	G	V	K	V	I	G	Y	T
Query Conservation
Alig confidence		.	.	.	.	.																																																														.
Template Conservation		.	.	.	.	.																																																														.
Template Sequence		.	.	.	.	.	A	E	A	V	L	K	E	L	V	K	T	D	I	A	I	T	T	A	L	I	P	G	K	P	A	P	V	L	I	T	E	E	M	V	T	K	M	K	P	G	S	V	I	I	D	L	A	V	E	A	G	G	N	C	P	L	S	E	P	G	K	.	I	V	V	K	H	G	V	K	I	V	G	H	T
Template Known Secondary structure		.	.	.	.	.									T	T		S									T	T	S						S							T	S		T	T						T	T	G	G	G	T		S	S	T	T			T	T		.					T	T							S
Template Predicted Secondary structure		.	.	.	.	.																																																														.
Template SS confidence
							1048	.	1050	.	.	.	.	.	.	.	.	.	1060	.	.	.	.	.	.	.	.	.	1070	.	.	.	.	.	.	.	.	.	1080	.	.	.	.	.	.	.	.	.	1090	.	.	.	.	.	.	.	.	.	1100	.	.	.	.	.	.	.	.		.	1110	.	.	.	.	.	.	.	.	.	1120	.
		314	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		D	L	P	G	R	L	P	T	Q	S	S	Q	L	Y	G	T	N	L	V	N	L	L	K	L	L	C	K	E	K	D	G	N	I	T	V	D	F	D	D	V	V	I	R	G	V	T	V	I	R	A	G	E	I	T	W	P
Query Conservation
Alig confidence
Template Conservation
Template Sequence		N	V	P	S	R	V	A	A	D	A	S	P	L	F	A	K	N	L	L	N	F	L	T	P	H	V	D	K	D	T	K	T	L	V	M	K	L	E	D	E	T	V	S	G	T	C	V	T	R	D	G	A	I	V	H	P
Template Known Secondary structure			G	G	G	G	G																	G	G	G			T	T	T	T						T	T	S											T	T				S
Template Predicted Secondary structure
Template SS confidence
		1122	.	.	.	.	.	.	.	1130	.	.	.	.	.	.	.	.	.	1140	.	.	.	.	.	.	.	.	.	1150	.	.	.	.	.	.	.	.	.	1160	.	.	.	.	.	.	.	.	.	1170	.	.	.	.	.	.	.

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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