Job Description P07001 Confidence 98.38% Date Thu Jan 5 10:59:54 GMT 2012 Rank 42 Aligned Residues 230 % Identity 17% Template c1dxyA_ PDB info PDB header:oxidoreductase Chain: A: PDB Molecule:d-2-hydroxyisocaproate dehydrogenase; PDBTitle: structure of d-2-hydroxyisocaproate dehydrogenase Resolution 1.86 Å

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		1	.	.	.	.	.	.	.	.	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.			.	.	.
Predicted Secondary structure																																																																													.	.
Query SS confidence																																																																													.	.
Query Sequence		M	R	I	G	I	P	R	E	R	L	T	N	E	T	R	V	A	A	T	P	K	T	V	E	Q	L	L	K	L	G	F	T	V	A	V	E	S	G	A	G	Q	L	A	S	F	D	D	K	A	F	V	Q	A	G	A	E	I	V	E	G	N	S	V	W	Q	S	E	I	I	L	K	V	N	A	P	.	.	L	D	D
Query Conservation																																																																													.	.
Alig confidence								.							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																		.	.
Template Conservation								.							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		M	K	I	I	A	Y	.	G	A	R	V	D	E	.	.	.	.	.	I	Q	Y	F	K	Q	W	A	K	D	T	G	N	T	L	E	Y	H	T	E	F	L	D	E	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	T	V	E	W	A	K	G	F	D	G	I	N	S	L	Q	T	T	P	Y	A	A	G
Template Known Secondary structure								.	S			T	T	T	.	.	.	.	.																			S	S				T	T	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	G	G	G	G	G	T	T		S							S	S		B
Template Predicted Secondary structure								.							.	.	.	.	.																										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		1	.	.	.	.	.		.	.	.	10	.	.						.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.																.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.
		79	80	.	.	.	.		.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.
Predicted Secondary structure								.
Query SS confidence								.
Query Sequence		E	I	A	L	L	N	.	P	G	T	T	L	V	S	F	I	W	P	A	Q	N	P	E	L	M	Q	K	L	A	E	R	N	V	T	V	M	A	M	D	S	V	P	R	I	S	R	A	Q	S	L	D	A	L	S	S	M	A	N	I	A	G	Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I
Query Conservation								.
Alig confidence								.																																										.	.
Template Conservation																																																		.	.
Template Sequence		V	F	E	K	M	H	A	Y	G	I	K	F	L	T	I	R	N	V	G	T	D	N	I	D	M	T	A	M	K	Q	Y	G	I	R	L	S	N	V	P	A	Y	S	P	A	A	I	A	E	.	.	F	A	L	T	D	T	L	Y	L	L	R	N	M	G	K	V	Q	A	Q	L	Q	A	G	D	Y	E	K	A	G	T
Template Known Secondary structure									T	T							S	S	S			T	T	B								T	T							T	T	S								.	.											T	T										T	T						T
Template Predicted Secondary structure																																																		.	.
Template SS confidence
		60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.			.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.
		158	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	N	S	L	G	A	I	V	R	A	F	D	T	R	P	E	V	K	E	Q	V	Q	S	M	G	A	E	F	L	E	L	D	F	K	E	E	A	G	S	G	D	G	Y	A	K	V	M	S	D	A	F	I	K	A
Query Conservation
Alig confidence																																														.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation																																														.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Sequence		F	I	G	K	E	L	G	Q	Q	T	V	G	V	M	G	T	G	H	I	G	Q	V	A	I	K	L	F	K	G	F	G	A	K	V	I	A	Y	D	P	Y	P	M	K	G	.	.	.	D	H	P	D	F	D	Y	V	S	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Known Secondary structure							G	G	G	S								S													T	T								S	S			S	S	.	.	.			T	T						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Predicted Secondary structure																																														.	.	.										.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template SS confidence
		138	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.				.	.	.	.	.	.	.	.	190
		238	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G	S	V	I	V	D	L	A
Query Conservation
Alig confidence		.	.	.	.																		.
Template Conservation		.	.	.	.																		.
Template Sequence		.	.	.	.	L	E	D	L	F	K	Q	S	D	V	I	D	L	H	V	P	G	.	I	E	Q	N	T	H	I	I	N	E	A	A	F	N	L	M	K	P	G	A	I	V	I	N	T	A
Template Known Secondary structure		.	.	.	.									S									.		G	G	G	T	T	S	B								S		T	T							S
Template Predicted Secondary structure		.	.	.	.																		.
Template SS confidence
						191	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.		.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions