Job Description P07001 Confidence 93.33% Date Thu Jan 5 10:59:54 GMT 2012 Rank 415 Aligned Residues 123 % Identity 28% Template c1bvuF_ PDB info PDB header:oxidoreductase Chain: F: PDB Molecule:protein (glutamate dehydrogenase); PDBTitle: glutamate dehydrogenase from thermococcus litoralis Resolution 2.50 Å

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		139	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.		.	.	.	.	.	190	.	.		.	.	.	.	.															.	.	200	.	.
Predicted Secondary structure																																																.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query SS confidence																																																.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Query Sequence		Y	R	A	I	V	E	A	A	H	E	F	G	R	F	F	T	G	Q	I	T	A	A	G	K	V	P	P	A	K	V	M	V	I	G	A	G	V	A	G	L	A	A	I	G	A	A	.	N	S	L	G	A	I	V	R	.	A	F	D	T	R	.	.	.	.	.	.	.	.	.	.	.	.	.	.	P	E	V	K	E
Query Conservation																																																.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Alig confidence															.	.	.	.	.	.	.	.	.	.																								.									.						.	.	.	.	.	.	.	.	.	.	.	.	.	.
Template Conservation															.	.	.	.	.	.	.	.	.	.
Template Sequence		S	Y	T	V	R	E	A	A	K	A	L	G	M	.	.	.	.	.	.	.	.	.	.	D	L	K	G	K	T	I	A	I	Q	G	Y	G	N	A	G	Y	Y	M	A	K	I	M	S	E	E	Y	G	M	K	V	V	A	V	S	D	T	K	G	G	I	Y	N	P	D	G	L	N	A	D	E	V	L	A	W	K	K
Template Known Secondary structure												T	T		.	.	.	.	.	.	.	.	.	.			T	T									S													T	T										T	T						T	T
Template Predicted Secondary structure															.	.	.	.	.	.	.	.	.	.
Template SS confidence
		195	.	.	.	.	200	.	.	.	.	.	.	.											.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.
		203	.	.	.	.					.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.
Predicted Secondary structure							.	.	.	.
Query SS confidence							.	.	.	.
Query Sequence		Q	V	Q	S	M	.	.	.	.	G	A	E	F	L	E	L	D	F	K	E	E	A	G	S	G	D	G	Y	A	K	V	M	S	D	A	F	I	K	A	E	M	E	L	F	A	A	Q	A	K	E	V	D	I	I	V	T	T	A	L	I	P	G	K	P	A	P	K	L	I	T	R	E	M	V	D	S	M	K	A	G
Query Conservation							.	.	.	.
Alig confidence							.	.	.	.								.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Conservation																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template Sequence		K	T	G	S	V	K	D	F	P	G	A	T	N	I	T	N	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	E	E	L	L	E	L	E	V	D	V	L	A	P	S	A	I	.	.	.	.	.	.	E	E	V	I	T	K	K	N	A	D	N	I	K	A	K
Template Known Secondary structure				S	S	S	T	T		T	T	S						.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.					T	S			S						S		.	.	.	.	.	.	S	S		B						T	T				S
Template Predicted Secondary structure																		.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.	.																	.	.	.	.	.	.
Template SS confidence
		265	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280																												.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.							.	.	.	300	.	.	.	.	.	.	.	.	.	310	.
		279	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310
Predicted Secondary structure
Query SS confidence
Query Sequence		S	V	I	V	D	L	A	A	Q	N	G	G	N	C	E	Y	T	V	P	G	E	I	F	T	T	E	N	G	V	K	V	I
Query Conservation
Alig confidence					.	.	.	.	.	.
Template Conservation					.	.	.	.	.	.
Template Sequence		I	V	A	.	.	.	.	.	.	E	L	A	N	G	P	T	T	P	E	A	D	E	I	L	Y	E	K	G	I	L	I	I
Template Known Secondary structure					.	.	.	.	.	.			S	S			B											T	T
Template Predicted Secondary structure					.	.	.	.	.	.
Template SS confidence
		312	.	.							.	.	.	.	.	320	.	.	.	.	.	.	.	.	.	330	.	.	.	.	.	.	.

No model constructed - rank, confidence too low

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Phyre is for academic use only

Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
© Structural Bioinformatics Group, Imperial College, London Lawrence Kelley, Benjamin Jefferys   Disclaimer Terms and Conditions