Job Description P37662 Confidence 100.00% Date Thu Jan 5 11:56:35 GMT 2012 Rank 2 Aligned Residues 372 % Identity 10% Template c2gfpA_ PDB info PDB header:membrane protein Chain: A: PDB Molecule:multidrug resistance protein d; PDBTitle: structure of the multidrug transporter emrd from2 escherichia coli Resolution 3.50 Å

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		12	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.	.	90	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	L	I	G	T	I	I	T	Q	F	A	L	G	S	V	Y	T	W	S	L	F	N	G	A	L	S	A	K	L	D	A	P	V	S	Q	V	A	F	S	F	G	L	L	S	L	G	L	A	I	S	S	S	V	A	G	K	L	Q	E	R	F	G	V	K	R	V	T	M	A	S	G	I	L	L	G	L	G	F	F
Query Conservation
Alig confidence
Template Conservation
Template Sequence		L	L	L	M	L	V	L	L	V	A	V	G	Q	M	A	Q	T	I	Y	I	P	A	I	A	D	M	A	R	D	L	N	V	R	E	G	A	V	Q	S	V	M	G	A	Y	L	L	T	Y	G	V	S	Q	L	F	Y	G	P	I	S	D	R	V	G	R	R	P	V	I	L	V	G	M	S	I	F	M	L	A	T	L
Template Known Secondary structure																													T	T	S	S	S	T	T																			T	T						T	T	S
Template Predicted Secondary structure
Template SS confidence
		9	10	.	.	.	.	.	.	.	.	.	20	.	.	.	.	.	.	.	.	.	30	.	.	.	.	.	.	.	.	.	40	.	.	.	.	.	.	.	.	.	50	.	.	.	.	.	.	.	.	.	60	.	.	.	.	.	.	.	.	.	70	.	.	.	.	.	.	.	.	.	80	.	.	.	.	.	.	.	.
		92	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.	.	.	.	.	.	.	170	.
Predicted Secondary structure
Query SS confidence
Query Sequence		L	T	A	H	S	D	N	L	M	M	L	W	L	S	A	G	V	L	V	G	L	A	D	G	A	G	Y	L	L	T	L	S	N	C	V	K	W	F	P	E	R	K	G	L	I	S	A	F	A	I	G	S	Y	G	L	G	S	L	G	F	K	F	I	D	T	Q	L	L	E	T	V	G	L	E	K	T	F	V	I	W
Query Conservation
Alig confidence																																																																													.	.	.	.
Template Conservation																																																																													.	.	.	.
Template Sequence		V	A	V	T	T	S	S	L	T	V	L	I	A	A	S	A	M	Q	G	M	G	T	G	V	G	G	V	M	A	R	T	L	P	R	D	L	Y	E	R	T	Q	L	R	H	A	N	S	L	L	N	M	G	I	L	V	S	P	L	L	A	P	L	I	G	G	L	L	D	T	M	W	N	W	R	A	.	.	.	.	C
Template Known Secondary structure																																								T	S	S			S																							S	S								.	.	.	.
Template Predicted Secondary structure																																																																													.	.	.	.
Template SS confidence
		89	90	.	.	.	.	.	.	.	.	.	100	.	.	.	.	.	.	.	.	.	110	.	.	.	.	.	.	.	.	.	120	.	.	.	.	.	.	.	.	.	130	.	.	.	.	.	.	.	.	.	140	.	.	.	.	.	.	.	.	.	150	.	.	.	.	.	.	.	.	.	160	.	.	.					.
		172	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.	.	.	.	.	.	250	.
Predicted Secondary structure
Query SS confidence
Query Sequence		G	A	I	A	L	L	M	I	V	F	G	A	T	L	M	K	D	A	P	K	Q	E	V	K	T	S	N	G	V	V	E	K	D	Y	T	L	A	E	S	M	R	K	P	Q	Y	W	M	L	A	V	M	F	L	T	A	C	M	S	G	L	Y	V	I	G	V	A	K	D	I	A	Q	S	L	A	H	L	D	V	V	S
Query Conservation
Alig confidence
Template Conservation
Template Sequence		Y	L	F	L	L	V	L	C	A	G	V	T	F	S	M	A	R	W	M	P	E	T	R	P	V	D	A	P	R	T	R	L	L	T	S	Y	K	T	L	F	G	N	S	G	F	N	C	Y	L	L	M	L	I	G	G	L	A	G	I	A	A	F	E	A	C	S	G	V	L	M	G	A	V	L	G	L	S	S	M	T
Template Known Secondary structure																			S	S				S	T	T	T						T	T	T		S	T																														S		S	S
Template Predicted Secondary structure
Template SS confidence
		165	.	.	.	.	170	.	.	.	.	.	.	.	.	.	180	.	.	.	.	.	.	.	.	.	190	.	.	.	.	.	.	.	.	.	200	.	.	.	.	.	.	.	.	.	210	.	.	.	.	.	.	.	.	.	220	.	.	.	.	.	.	.	.	.	230	.	.	.	.	.	.	.	.	.	240	.	.	.	.
		252	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300			.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.	.	.	.	.	.
Predicted Secondary structure																																																			.	.
Query SS confidence																																																			.	.
Query Sequence		A	A	N	A	V	T	V	I	S	I	A	N	L	S	G	R	L	V	L	G	I	L	S	D	K	I	A	R	I	R	V	I	T	I	G	Q	V	I	S	L	V	G	M	A	A	L	L	F	A	.	.	P	L	N	A	V	T	F	F	A	A	I	A	C	V	A	F	N	F	G	G	T	I	T	V	F	P	S	L	V
Query Conservation																																																			.	.
Alig confidence																																																			.	.
Template Conservation
Template Sequence		V	S	I	L	F	I	L	P	I	P	A	A	F	F	G	A	W	F	A	G	R	P	N	K	R	F	S	T	L	M	W	Q	S	V	I	C	C	L	L	A	G	L	L	M	W	I	P	D	W	F	G	V	M	N	V	W	T	L	L	V	P	A	A	L	F	F	F	G	A	G	M	L	F	P	L	A	T	S	G	A
Template Known Secondary structure								T														T	T	T	T																T	S	S	S	S	S																											T	S	S	T	T
Template Predicted Secondary structure
Template SS confidence
		245	.	.	.	.	250	.	.	.	.	.	.	.	.	.	260	.	.	.	.	.	.	.	.	.	270	.	.	.	.	.	.	.	.	.	280	.	.	.	.	.	.	.	.	.	290	.	.	.	.	.	.	.	.	.	300	.	.	.	.	.	.	.	.	.	310	.	.	.	.	.	.	.	.	.	320	.	.	.	.
		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.	.	.	.	.	.	.
Predicted Secondary structure
Query SS confidence
Query Sequence		S	E	F	F	G	L	N	N	L	A	K	N	Y	G	V	I	Y	L	G	F	G	I	G	S	I	C	G	S	I	I	A	S	L	F	G	G	F	Y	V	T	F	Y	V	I	F	A	L	L	I	L	S	L	A	L	S	T	T	I	R
Query Conservation
Alig confidence							.
Template Conservation							.
Template Sequence		M	E	P	F	P	.	F	L	A	G	T	A	G	A	L	V	G	G	L	Q	N	I	G	S	G	V	L	A	S	L	S	A	M	L	P	Q	T	G	Q	G	S	L	G	L	L	M	T	L	M	G	L	L	I	V	L	C	W	L	P
Template Known Secondary structure			T				.																						S	T	T		T																							T
Template Predicted Secondary structure							.
Template SS confidence
		325	.	.	.	.		330	.	.	.	.	.	.	.	.	.	340	.	.	.	.	.	.	.	.	.	350	.	.	.	.	.	.	.	.	.	360	.	.	.	.	.	.	.	.	.	370	.	.	.	.	.	.	.	.	.	380	.	.

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Please cite: Protein structure prediction on the web: a case study using the Phyre server
Kelley LA and Sternberg MJE. Nature Protocols 4, 363 - 371 (2009) [pdf] [Import into BibTeX]
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